Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b23
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 197 HPGRHVPGAHAPHPGQS 247
           HP +H P  + PH G S
Sbjct: 317 HPHQHHPSQYHPHRGSS 333


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 596 LRALEPDELHEHVPVHREVRDALVLQPVRELAEVHA 489
           L A +PD L          ++ALVL+ V+  AE HA
Sbjct: 325 LGADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHA 360


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 463 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 362
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWF 118


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 192 HPIPGGMYPGRMLR 233
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 463 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 362
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWF 118


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 192 HPIPGGMYPGRMLR 233
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +2

Query: 146 RIA*LSGTIYCDTVRAPHPGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAA 325
           +++ +S +     VR+P  G+  P A AP P    P  + +   P +    G        
Sbjct: 388 QVSPVSMSALVSAVRSPAGGQLPPSAGAPMP--PIPNMSNMSGMPPLPNMPGSMPTMPTM 445

Query: 326 PQLPLRGDVRR 358
           P   + G +RR
Sbjct: 446 PS--MAGPIRR 454


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 243 RVPPGAQRFAINLQCGPNTD 302
           RVPPG   +  N +C  + D
Sbjct: 464 RVPPGTPIYECNKRCNCDID 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,889
Number of Sequences: 438
Number of extensions: 4211
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)