Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b17
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    30   0.37 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.0  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    27   2.6  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    26   4.6  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   8.0  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   8.0  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -2

Query: 326 VDIRSVMCFINILFSIATRRIPRLPGSWVTFVKDFTEGILLNSNIEGAYQCFFGFGLTIL 147
           VD++S+  + +   S+  +R+P L       +      IL N ++EG     +  GL  +
Sbjct: 513 VDLKSIETYASKCLSVEDQRLPVLLNPVAIEISKIASKILQNPSLEGKDAPLYSCGLDSI 572

Query: 146 HNFK 135
           H+ +
Sbjct: 573 HSVR 576


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 561 PGFMH-IFNKDNIRNLAHDPEHRQLMPQSS 475
           P F H  F KDN R++   P H Q  P SS
Sbjct: 107 PSFNHSFFEKDNARDIPQQPSHSQ-NPSSS 135


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 334 VSMDIIGRGIEISKVNVTSDF 396
           V+ D+ GRGI+I +VN+  ++
Sbjct: 350 VATDVFGRGIDIERVNIVINY 370


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 597 ISFEQSIIEI*YPGFMHIFNKDNIRNLAHDPEHRQLMPQSSCNRVQCGFRL 445
           +SF+Q        G+ +  +KD +RN+     H + + Q  C   Q  +R+
Sbjct: 1   MSFQQRFARALDVGYKNFLSKDAVRNIFAYDNHLRGLVQKECKIHQTPYRV 51


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 588 EQSIIEI*YPGFMHIFNKDNIRNLAHDPEHRQLMPQSSCN 469
           E  ++ +   G +H F+   + N+   PE ++L+ +S  N
Sbjct: 59  EVMVLVVSETGLVHTFSTPKLENVVKSPEGQKLITESLIN 98


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 533 SLLKICMKPGY*ISIIDCSKLILEKTTHQLIQGIYLRQNS 652
           S L + MK GY + + D S+  L    ++ ++GIY   NS
Sbjct: 75  SKLPLKMKKGYSVHLKDQSRDALTDYRYKSMKGIYSEANS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,354
Number of Sequences: 5004
Number of extensions: 69131
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)