Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b17
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    30   1.6  
07_03_0947 - 22805419-22805571,22805736-22805966,22806161-228063...    28   8.3  
01_05_0296 + 20567259-20567386,20568895-20569123,20569205-205694...    28   8.3  
01_05_0295 + 20537147-20537291,20539111-20539283,20539365-205395...    28   8.3  

>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 319  MSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLNS 468
            ++TGT + D +  G+E  KV+ T   Q VH      G   D   E  L +
Sbjct: 4588 INTGTEAADDVATGLEYGKVSSTELVQAVHDMLSAAGVRMDATKETLLQT 4637


>07_03_0947 -
           22805419-22805571,22805736-22805966,22806161-22806328,
           22806425-22806540,22806853-22807005,22807241-22807384,
           22807584-22807707,22808126-22808689
          Length = 550

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 151 MVNPKPKKHWYAPSMLEFNKMPSVKSLTKVT-HEPGKRGIRRVAMLNKMFMKHITDLMST 327
           M+NP P++   A  +L+   + ++K    V   E  K  +++ +++NK F KH   +++ 
Sbjct: 313 MLNPDPRRRLNAQQVLDHPWLQNIKKAPNVNLGETVKARLQQFSVMNK-FKKHALRVIAE 371

Query: 328 GTVSMDIIGRGIEISKVNVTSD 393
                ++ G      K+++  D
Sbjct: 372 HLSVEEVAGIKDMFEKMDLNKD 393


>01_05_0296 +
           20567259-20567386,20568895-20569123,20569205-20569436,
           20569583-20569701,20570321-20570377,20570455-20570639,
           20571416-20571560,20571630-20571713,20571798-20571861,
           20571889-20571932
          Length = 428

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 334 VSMDIIGRGIEISKVNVTSDF 396
           V+ D++GRGI+I +VN+  ++
Sbjct: 333 VATDLVGRGIDIERVNIVINY 353


>01_05_0295 +
           20537147-20537291,20539111-20539283,20539365-20539596,
           20539743-20539861,20540480-20540536,20540615-20540799,
           20542252-20542396,20542463-20542546,20542634-20542697,
           20542799-20542809
          Length = 404

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 334 VSMDIIGRGIEISKVNVTSDF 396
           V+ D++GRGI+I +VN+  ++
Sbjct: 320 VATDLVGRGIDIERVNIVINY 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,919,755
Number of Sequences: 37544
Number of extensions: 406334
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)