Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21b17
(705 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC057772-1|AAH57772.1| 343|Homo sapiens chromosome 18 open read... 85 2e-16
BC014195-1|AAH14195.1| 343|Homo sapiens chromosome 18 open read... 85 2e-16
AK024825-1|BAB15022.1| 343|Homo sapiens protein ( Homo sapiens ... 85 2e-16
AF261073-1|AAM20740.1| 343|Homo sapiens hypothetical p38 protei... 85 2e-16
AF439745-1|AAL32051.1| 242|Homo sapiens hypothetical protein p2... 56 2e-07
BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein... 31 4.0
BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein... 31 4.0
AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related pr... 31 4.0
AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein... 31 4.0
AL133320-2|CAI21783.1| 281|Homo sapiens chromosome 1 open readi... 30 7.0
>BC057772-1|AAH57772.1| 343|Homo sapiens chromosome 18 open reading
frame 22 protein.
Length = 343
Score = 85.4 bits (202), Expect = 2e-16
Identities = 64/178 (35%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Frame = +1
Query: 97 HVSSVTCS--IKKQSLKLCKMV---NPKPKKH-WYAPSMLEFNKMPSVKSLTKVTHEPGK 258
H S+V+C +KK + K K V +P H Y PS LEF + K K H
Sbjct: 35 HCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYKPSKLEFLMRSTSKKTRKEDHA--- 91
Query: 259 RGIRRVAMLNKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTST 438
R+ LN + K +TDL+ T VS ++ +E+SKV++T DF YW K T +
Sbjct: 92 ----RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW--KTTLS 145
Query: 439 DEET---EATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFG 603
E+ EA L A +RH L + + VP IVFV+D A + +LD L ADFG
Sbjct: 146 AEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADFG 203
>BC014195-1|AAH14195.1| 343|Homo sapiens chromosome 18 open reading
frame 22 protein.
Length = 343
Score = 85.4 bits (202), Expect = 2e-16
Identities = 64/178 (35%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Frame = +1
Query: 97 HVSSVTCS--IKKQSLKLCKMV---NPKPKKH-WYAPSMLEFNKMPSVKSLTKVTHEPGK 258
H S+V+C +KK + K K V +P H Y PS LEF + K K H
Sbjct: 35 HCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYKPSKLEFLMRSTSKKTRKEDHA--- 91
Query: 259 RGIRRVAMLNKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTST 438
R+ LN + K +TDL+ T VS ++ +E+SKV++T DF YW K T +
Sbjct: 92 ----RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW--KTTLS 145
Query: 439 DEET---EATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFG 603
E+ EA L A +RH L + + VP IVFV+D A + +LD L ADFG
Sbjct: 146 AEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADFG 203
>AK024825-1|BAB15022.1| 343|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21172 fis, clone CAS11031. ).
Length = 343
Score = 85.4 bits (202), Expect = 2e-16
Identities = 64/178 (35%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Frame = +1
Query: 97 HVSSVTCS--IKKQSLKLCKMV---NPKPKKH-WYAPSMLEFNKMPSVKSLTKVTHEPGK 258
H S+V+C +KK + K K V +P H Y PS LEF + K K H
Sbjct: 35 HCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYKPSKLEFLMRSTSKKTRKEDHA--- 91
Query: 259 RGIRRVAMLNKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTST 438
R+ LN + K +TDL+ T VS ++ +E+SKV++T DF YW K T +
Sbjct: 92 ----RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW--KTTLS 145
Query: 439 DEET---EATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFG 603
E+ EA L A +RH L + + VP IVFV+D A + +LD L ADFG
Sbjct: 146 AEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADFG 203
>AF261073-1|AAM20740.1| 343|Homo sapiens hypothetical p38 protein
protein.
Length = 343
Score = 85.4 bits (202), Expect = 2e-16
Identities = 64/178 (35%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Frame = +1
Query: 97 HVSSVTCS--IKKQSLKLCKMV---NPKPKKH-WYAPSMLEFNKMPSVKSLTKVTHEPGK 258
H S+V+C +KK + K K V +P H Y PS LEF + K K H
Sbjct: 35 HCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYKPSKLEFLMRSTSKKTRKEDHA--- 91
Query: 259 RGIRRVAMLNKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTST 438
R+ LN + K +TDL+ T VS ++ +E+SKV++T DF YW K T +
Sbjct: 92 ----RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW--KTTLS 145
Query: 439 DEET---EATLNSVAGALRHELSVLRIMGQVPYIVFVKDMHEARILDLDNRLLKADFG 603
E+ EA L A +RH L + + VP IVFV+D A + +LD L ADFG
Sbjct: 146 AEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADFG 203
>AF439745-1|AAL32051.1| 242|Homo sapiens hypothetical protein p27
protein.
Length = 242
Score = 55.6 bits (128), Expect = 2e-07
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Frame = +1
Query: 97 HVSSVTCS--IKKQSLKLCKMV---NPKPKKH-WYAPSMLEFNKMPSVKSLTKVTHEPGK 258
H S+V+C +KK + K K V +P H Y PS LEF + K K H
Sbjct: 35 HCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYKPSKLEFLMRSTSKKTRKEDHA--- 91
Query: 259 RGIRRVAMLNKMFMKHITDLMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYW 417
R+ LN + K +TDL+ T VS ++ +E+SKV++T DF YW
Sbjct: 92 ----RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW 140
>BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein
receptor-related protein 6 protein.
Length = 1613
Score = 31.1 bits (67), Expect = 4.0
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 217 SVKSLTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDII-GRGIEISKVNVTSD 393
S++++ + ++P + + + M K D TV + + + +EI +++ D
Sbjct: 963 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 1022
Query: 394 FQTVHVYWICKGTSTDEETEATLNSVAGALRHE 492
+ ++YW C+ T+ T SV L+ E
Sbjct: 1023 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGE 1055
>BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein
receptor-related protein 6 protein.
Length = 1613
Score = 31.1 bits (67), Expect = 4.0
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 217 SVKSLTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDII-GRGIEISKVNVTSD 393
S++++ + ++P + + + M K D TV + + + +EI +++ D
Sbjct: 963 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 1022
Query: 394 FQTVHVYWICKGTSTDEETEATLNSVAGALRHE 492
+ ++YW C+ T+ T SV L+ E
Sbjct: 1023 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGE 1055
>AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related protein
6 protein.
Length = 1613
Score = 31.1 bits (67), Expect = 4.0
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 217 SVKSLTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDII-GRGIEISKVNVTSD 393
S++++ + ++P + + + M K D TV + + + +EI +++ D
Sbjct: 963 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 1022
Query: 394 FQTVHVYWICKGTSTDEETEATLNSVAGALRHE 492
+ ++YW C+ T+ T SV L+ E
Sbjct: 1023 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGE 1055
>AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein
receptor-related protein 6 variant protein.
Length = 1477
Score = 31.1 bits (67), Expect = 4.0
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 217 SVKSLTKVTHEPGKRGIRRVAMLNKMFMKHITDLMSTGTVSMDII-GRGIEISKVNVTSD 393
S++++ + ++P + + + M K D TV + + + +EI +++ D
Sbjct: 827 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 886
Query: 394 FQTVHVYWICKGTSTDEETEATLNSVAGALRHE 492
+ ++YW C+ T+ T SV L+ E
Sbjct: 887 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGE 919
>AL133320-2|CAI21783.1| 281|Homo sapiens chromosome 1 open reading
frame 141 protein.
Length = 281
Score = 30.3 bits (65), Expect = 7.0
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 112 TCSIKKQSLKLCKMVNPKPKKHWYAPSMLE-FNKMPSVKSLTKVTHEPGKRGIRRVAMLN 288
+CSI K + + P+P+K + S L F +VK+ + EP + ++ ++
Sbjct: 70 SCSITKSKMHVSFKCEPEPRKSNFEKSNLRPFFIQTNVKNKESESTEPVEEHLKSRSIRP 129
Query: 289 KMFMKHITDLMSTGTVSM 342
+++K T++ + G +++
Sbjct: 130 YLYLKDTTEMENAGPLNV 147
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,742,686
Number of Sequences: 237096
Number of extensions: 2491945
Number of successful extensions: 7882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7877
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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