Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b17
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 316 LMSTGTVSMDIIGRGIEISKVNVTSDFQTVHVYWICKGTSTDEETEATLNSV 471
           +++ GTV+ DI+ R I +   N+  +++   +    KGT T  +T   + S+
Sbjct: 23  MLTRGTVN-DIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSM 73


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +1

Query: 499 VLRIMGQVPYIVFVKDMHEARILDLDNR 582
           + R++ + PY++ + D H+   + + N+
Sbjct: 458 ISRVLEKEPYVIILDDEHDDAFIGIVNQ 485


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 410 FIGYAKVPRQMKRR 451
           ++ Y K+PR+M++R
Sbjct: 398 YMAYRKLPREMRQR 411


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 410 FIGYAKVPRQMKRR 451
           ++ Y K+PR+M++R
Sbjct: 366 YMAYRKLPREMRQR 379


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 323 PQERFQWILSDEGLKYQK 376
           P  R QW+ +DE L + +
Sbjct: 429 PLPRVQWLKNDEALNHDQ 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,312
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)