Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b16
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...   108   9e-25
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    40   5e-04
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.7  

>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score =  108 bits (259), Expect = 9e-25
 Identities = 48/91 (52%), Positives = 61/91 (67%)
 Frame = +3

Query: 240 WEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIP 419
           W H AGPKT+ FWAPA KW LV++G+GD  R  E LSI Q A+L ATG IW+R+SL++ P
Sbjct: 10  WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRP 69

Query: 420 KNYSLFAVNVFVALTSLYQIGRAFKYQQALK 512
           KNY    VN F+A+    Q+ R   YQ+  K
Sbjct: 70  KNYFNATVNFFLAIVGAVQVSRILVYQRQQK 100


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +3

Query: 273 FWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVNVF 452
           FW P   +G+ IA + DL +    +S   + +L     ++ RY+ ++ P+NY L   + F
Sbjct: 37  FWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRYAWMVSPRNYLLLGCHAF 96


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 378 TGIIWSRYSLVIIPKNYSLFAVNVFVA 458
           TGI+WS Y++      Y+ FA + F A
Sbjct: 657 TGILWSNYAIYDPKTAYNTFAASTFTA 683


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 366  SLAATG---IIWSRYSLVIIPKNYSLFAVNVFVALTSLYQ 476
            SL ++G   I+W   S++  PKNYSL +     A   LYQ
Sbjct: 1262 SLCSSGYESIVWDLTSILFDPKNYSLPSELSSEAREVLYQ 1301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,812
Number of Sequences: 5004
Number of extensions: 60644
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)