Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b16
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937...   105   4e-23
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693...   103   1e-22
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665...    99   2e-21
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903...    65   6e-11
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304...    50   1e-06
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     31   1.3  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    30   1.7  
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    29   3.9  
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835...    29   5.2  

>07_03_0848 +
           21992610-21992724,21993009-21993137,21993625-21993723,
           21993833-21993885,21994157-21994230,21994382-21994433
          Length = 173

 Score =  105 bits (252), Expect = 4e-23
 Identities = 43/92 (46%), Positives = 63/92 (68%)
 Frame = +3

Query: 222 SKLRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRY 401
           SKL+  W H AGPKTI FWAP FKWG+ IA + D  +P E +S PQ   +A +G+IW+R+
Sbjct: 67  SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARW 126

Query: 402 SLVIIPKNYSLFAVNVFVALTSLYQIGRAFKY 497
            +VI P N++L +VN  +A+T + Q+ R  ++
Sbjct: 127 GMVITPINWNLSSVNAAMAVTGVCQLSRKIRH 158


>07_03_0223 -
           15368631-15368682,15368765-15368838,15369312-15369364,
           15369486-15369584,15370655-15370715,15372741-15372830
          Length = 142

 Score =  103 bits (248), Expect = 1e-22
 Identities = 45/86 (52%), Positives = 61/86 (70%)
 Frame = +3

Query: 237 LWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVII 416
           L+  + G  TI FWAP FKWG+ IA + D  +P E +S PQ  ++A TG+IWSRYS+VI 
Sbjct: 41  LYGIKTGHHTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVIT 100

Query: 417 PKNYSLFAVNVFVALTSLYQIGRAFK 494
           PKN++LF+VNV +A T LYQ+ R  +
Sbjct: 101 PKNWNLFSVNVAMAGTGLYQLSRKIR 126


>08_02_0303 +
           15566152-15566209,15566265-15566363,15566465-15566517,
           15566695-15566768,15566858-15566909
          Length = 111

 Score =   99 bits (238), Expect = 2e-21
 Identities = 42/86 (48%), Positives = 59/86 (68%)
 Frame = +3

Query: 267 IFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVN 446
           + FWAP FKWG+ IA + D  +P E +S PQ  ++A TG+IWSRYS+VI PKN++LF+VN
Sbjct: 20  VHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLFSVN 79

Query: 447 VFVALTSLYQIGRAFKYQQALKNKEE 524
           V +A T LYQ+ R  +       K++
Sbjct: 80  VAMAGTGLYQLSRKIRKDYFSDQKDD 105


>09_03_0104 -
           12389907-12389943,12390086-12390203,12390339-12390393,
           12391607-12391702
          Length = 101

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 34/89 (38%), Positives = 49/89 (55%)
 Frame = +3

Query: 255 GPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSL 434
           GPKT  FW P   WG V+AGL D+N+P E +S   +A L      + R++ ++ P+NY L
Sbjct: 14  GPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL------FMRFAWMVQPRNYLL 67

Query: 435 FAVNVFVALTSLYQIGRAFKYQQALKNKE 521
            A +       LYQ+ R  + Q  L+ KE
Sbjct: 68  LACHASNESVQLYQMSRWARAQGYLEKKE 96


>08_02_0653 -
           19729325-19729378,19730137-19730174,19730391-19730445,
           19731401-19731496
          Length = 80

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +3

Query: 231 RPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLS 350
           +  W    GP+T  FW P   WG V+AGL D+N+P E +S
Sbjct: 6   KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMIS 45


>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 274 KNIVLGPASCSHSGRSFDGTNLSADVTKTLYIRDILVCNFALPGELDKEGSVGFAK*CS 98
           + + +  A CSH    +    LS D +K L+ + I   +   P EL+ + S+G  K C+
Sbjct: 314 RKVTVSKACCSHDDAIYRMKPLSDDASKRLFYKRIFKHDNGCPPELE-QVSIGILKKCA 371


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
 Frame = +3

Query: 300 LVIAGLGDLNRPVE-TLSIPQSASLAATGIIWSRYSLVIIPKNYSLF--AVNVFVALTSL 470
           L +  L  L R +E    + +S S A T +   R   V + ++       +N F +  S+
Sbjct: 462 LYVDNLMQLERTLERNAHLERSLSAATTEVEELREKKVALEESCKHLNSKINGFQSERSM 521

Query: 471 YQIGRAFKYQQALKNKEEKK*HFDIILLDN---LHIYFRKIHLSESTQHSTVNQNS 629
           + I R       ++   EK    + +L +N   L I  RK++ SE + H+ +NQNS
Sbjct: 522 F-IARIEGISHTMEKLSEKNVFLENLLSENNTELEILRRKLNDSEESTHALLNQNS 576


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 322 SPKPAITKPHLKAGAQKNIVLGPA-SCSHSGRS 227
           SP PA   P +  GAQ+N+  GP     H G S
Sbjct: 244 SPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSS 276


>05_04_0401 -
           20982923-20983106,20983129-20983186,20983322-20983503,
           20983637-20983752,20984148-20984234,20984334-20984477,
           20984556-20984672,20984790-20984936,20985717-20985938,
           20986919-20987072,20987583-20987632,20987870-20987921,
           20987985-20988211
          Length = 579

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +3

Query: 117 PTDPSLSNSPGSAKLHTKMSRIYRVLVTSADKFVPSKLRPLWEHEAGPKTIFFWAPAFKW 296
           P  P L+        H   S +   LV    +FV +   P++       T+ FWAP F++
Sbjct: 63  PLGPDLARPQSEVSWHLGASAM-DALVNRVSEFVNAGFSPVFMK----LTVLFWAPTFRY 117

Query: 297 GLVIAGLGDLNRP 335
            +   G      P
Sbjct: 118 DMFTGGPSQQRSP 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,785
Number of Sequences: 37544
Number of extensions: 347537
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)