Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b16
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.57 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   9.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 288 FKWGLVI-AGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVII 416
           F WG+++ +G+G+          P+S S    G++W+ ++++I+
Sbjct: 616 FAWGVLLNSGIGE--------GTPRSFSARVLGMVWAGFAMIIV 651


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 178 VYTEFWSHQQTNLSHRNSARYGNTKLDLKR 267
           +Y  F   +QT++SH N+    N   D KR
Sbjct: 857 MYKPFLIPEQTSISHENNQPTMNKCSDRKR 886


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 258 VQLRVPIAGGVSMGQICLLM*PKLCIYG 175
           +Q+RV +  G  +  I  L  P+ C++G
Sbjct: 515 LQIRVGVHSGAVVAGIVGLKMPRYCLFG 542


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 398 PRPDNASCSQ*CGLRYREGLNRPIQVTQ 315
           PRP +    +   L    G NRP+ ++Q
Sbjct: 80  PRPPHPRLRREAELEAEPGNNRPVYISQ 107



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 398 PRPDNASCSQ*CGLRYREGLNRPIQVTQ 315
           PRP +    +   L    G NRP+ ++Q
Sbjct: 136 PRPPHPRLRREAELEAEPGNNRPVYISQ 163


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 740 IYINDNFNY*IFVFFNRLMLLHLCDSK 660
           +Y  D  N  +F++   + +LH  D+K
Sbjct: 114 VYCRDRLNPNLFIYALSVAILHRPDTK 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,952
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)