Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b08
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical ...    28   2.8  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    27   8.6  
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.     27   8.6  
AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   8.6  

>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
           protein R06B10.1 protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +2

Query: 131 GHVNVVDNNHPGHGNGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYY---VDPPQ 292
           G +  V+++   + N Y+P++    +VNP K    + NG+  + + + A Y   VDPP+
Sbjct: 813 GVLKYVEDHVDDNANAYKPMNPIEMVVNPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPK 871


>AF100656-6|AAF99961.1|  240|Caenorhabditis elegans Hypothetical
           protein F49F1.7 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = +3

Query: 168 TETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLP 317
           TET     TT          TT     T  STTV  T T PK   T S P
Sbjct: 159 TETTETTETTKAIKTTKTTETTKATKTTTPSTTVKTTTTKPKPPCTDSSP 208


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 182 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 268
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +2

Query: 158 HPGHGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFP 325
           +P  G  + P  N   + N P  +     GY   P         PP+G  Y++P   P+ 
Sbjct: 35  NPQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYK 92

Query: 326 GARGGK 343
             +GGK
Sbjct: 93  PGKGGK 98


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 210 LILPKITTLMETATNLSTTVHITWTLPKAD 299
           +I+   TT +++ T+LS   + TW LPK D
Sbjct: 18  VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 179 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 319
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 242  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 331
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical
           protein R52.6 protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 171 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 287
           E  T ++TT  TS +  K+   M  AT       + WTL
Sbjct: 51  EETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89


>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
            protein ZK617.1c protein.
          Length = 6629

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 4185 NAAGHGEPSNGSEPVTCRPYVEKP 4208


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
            protein ZK617.1b protein.
          Length = 7158

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 4714 NAAGHGEPSNGSEPVTCRPYVEKP 4737


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
            protein ZK617.1a protein.
          Length = 6839

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 4395 NAAGHGEPSNGSEPVTCRPYVEKP 4418


>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
            ZK617.1c protein.
          Length = 6629

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 4185 NAAGHGEPSNGSEPVTCRPYVEKP 4208


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
            ZK617.1b protein.
          Length = 7158

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 4714 NAAGHGEPSNGSEPVTCRPYVEKP 4737


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
            ZK617.1a protein.
          Length = 6839

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 4395 NAAGHGEPSNGSEPVTCRPYVEKP 4418


>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
          Length = 6048

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 155  NHPGHG---NGYEPIDNRPYIVNP 217
            N  GHG   NG EP+  RPY+  P
Sbjct: 3604 NAAGHGEPSNGSEPVTCRPYVEKP 3627


>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 149 DNNHPGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRP 301
           +N + G+G+   P    P+   PP    P G  Y P   GA+Y  PP G P
Sbjct: 278 NNGNNGNGHPQYPYPVPPHGYYPPGYPYPPGYPYPP--PGAFYY-PPGGIP 325


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +2

Query: 170 GNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 337
           G G  P    P  V PP  Y   P  +G    DNGA     P G PY    P P   G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPSDVPAPYPSG 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,106,504
Number of Sequences: 27780
Number of extensions: 230924
Number of successful extensions: 627
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)