Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21b06
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73906-5|CAA98116.1| 123|Caenorhabditis elegans Hypothetical pr... 69 2e-12
AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical ... 29 2.0
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear recep... 28 2.7
AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear hormo... 28 2.7
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 3.5
AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical... 28 3.5
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 28 3.5
AF016685-2|AAG24148.1| 404|Caenorhabditis elegans Hypothetical ... 27 4.6
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z68218-3|CAA92473.1| 325|Caenorhabditis elegans Hypothetical pr... 27 6.1
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 27 6.1
AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormo... 27 6.1
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 6.1
AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin ... 27 6.1
Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical pr... 27 8.1
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 27 8.1
AF022978-3|AAG24182.2| 403|Caenorhabditis elegans Hypothetical ... 27 8.1
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 27 8.1
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z73906-5|CAA98116.1| 123|Caenorhabditis elegans Hypothetical
protein D2030.4 protein.
Length = 123
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 64 DDNPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLDYQVCRYKEMPLL- 240
D PTFDPQ GF+ RK REM A E++ ++ RDYCAH+L+ C+ + P
Sbjct: 22 DRPPTFDPQYGFERPRKVREMKATWEEMEQWKLKPAQRDYCAHHLISLMKCQTQNAPFAG 81
Query: 241 YRCAHEKHNYLNCEQQDYVLRMK 309
+ C E+ + CE D+++R+K
Sbjct: 82 HACDGERGAWDKCEYDDHIMRIK 104
>AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical
protein T27B7.3 protein.
Length = 387
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRND 128
HG ++G I+C CG FRR S+ S WI KK + D
Sbjct: 16 HGTHFGVITCRACGVFFRR-SF--KSKWIF--KKCKKED 49
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 28.3 bits (60), Expect = 2.7
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 124 MIAKEEDLI-----SARIPNKYRDYCAHYLLDYQ---VCRYKEMPLLYRCAHEKHNYLNC 279
+IAK++ +I S + ++ DY Y+ D + R KEM L R A KH+Y C
Sbjct: 342 VIAKDQKMICPVDESGKYTSEVPDYQGVYVKDADKLIIKRLKEMGNLVRQAEVKHSYPFC 401
Query: 280 EQQDYVLRMK 309
+ D L K
Sbjct: 402 WRSDTPLLYK 411
>AF273807-1|AAG15156.1| 416|Caenorhabditis elegans nuclear
receptor NHR-59 protein.
Length = 416
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HGA++G I+C C FRR
Sbjct: 28 HGAHFGAITCRACAAFFRR 46
>AF016675-1|AAF02172.2| 416|Caenorhabditis elegans Nuclear
hormone receptor familyprotein 59 protein.
Length = 416
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HGA++G I+C C FRR
Sbjct: 28 HGAHFGAITCRACAAFFRR 46
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR*SYF*PSSWIS 101
HG ++G ++C C FRR S S WI+
Sbjct: 52 HGTHFGAVTCRACAAFFRRSS---KSKWIN 78
>AF016421-11|AAM45373.2| 417|Caenorhabditis elegans Hypothetical
protein F44E7.8 protein.
Length = 417
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 3 HYHHGANYGRISCSLCGPEFRR 68
H HG ++G +SC C FRR
Sbjct: 31 HTAHGVHFGVLSCRACAAFFRR 52
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 79 FDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAH--YLLDYQVCRYK 225
F P ERK+ EM+ EDL+ +P +Y H Y L+ + +++
Sbjct: 804 FLPPFAANSERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALEKDLLKFE 854
>AF016685-2|AAG24148.1| 404|Caenorhabditis elegans Hypothetical
protein F59E11.10 protein.
Length = 404
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HG +YG +SC C FRR
Sbjct: 29 HGNHYGVVSCRACAAFFRR 47
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
K04B12.1 protein.
Length = 1764
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 70 NPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYR 177
NPT P G +Y + ++ +I + +L A PN ++
Sbjct: 1013 NPTLSPFKGVRYHQGEQSLILEGHNLNLAAEPNDFK 1048
>Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical
protein T22C1.7 protein.
Length = 747
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 34 YHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEEDLISARIPN 168
YH + ++ ++ F PQ G+ Q + +DL+ IPN
Sbjct: 480 YHNHVMPNSNTNHVNFMPQYGYSDPNSQLQTPINSQDLLQPHIPN 524
>Z68218-3|CAA92473.1| 325|Caenorhabditis elegans Hypothetical
protein K01H12.3 protein.
Length = 325
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 15 GANYGRISCSLCGPEFRR 68
G ++G ISC+ CG FRR
Sbjct: 12 GYHFGAISCAACGAFFRR 29
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 3 HYHHGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRN 125
H HG ++G SC C FRR + S W S +K T+N
Sbjct: 57 HGAHGNHFGATSCRACAAFFRRAA---NSKW-SFQKCQTQN 93
>AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 130 protein.
Length = 440
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HG ++G ISC C FRR
Sbjct: 45 HGNHFGAISCRACAAFFRR 63
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 70 NPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYR 177
NPT P G +Y + ++ +I + +L A PN ++
Sbjct: 1015 NPTLSPFKGVRYHQGEQSLILEGHNLNLAAEPNDFK 1050
>AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin
protein.
Length = 747
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 34 YHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEEDLISARIPN 168
YH + ++ ++ F PQ G+ Q + +DL+ IPN
Sbjct: 480 YHNHVMPNSNTNHVNFMPQYGYSDPNSQLQTPINSQDLLQPHIPN 524
>Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical
protein K06B4.8 protein.
Length = 378
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 15 GANYGRISCSLCGPEFRR 68
G NYG ++CS C FRR
Sbjct: 31 GMNYGALTCSACKMFFRR 48
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/31 (25%), Positives = 22/31 (70%)
Frame = -1
Query: 298 KRNLVVRNSNNCVSHGRIDKEAAFLYSDKLD 206
++++ + ++ NC+SH +++ + YS+K+D
Sbjct: 186 EQDVFIADTYNCISHPQVNNDLFNEYSEKVD 216
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear
receptor NHR-115 protein.
Length = 391
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HG ++G +SC C FRR
Sbjct: 16 HGTHFGIVSCRACAAFFRR 34
>AF022978-3|AAG24182.2| 403|Caenorhabditis elegans Hypothetical
protein T01G6.6 protein.
Length = 403
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HG ++G +SC C FRR
Sbjct: 17 HGNHFGAVSCRACSAFFRR 35
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear
hormone receptor familyprotein 115 protein.
Length = 391
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 12 HGANYGRISCSLCGPEFRR 68
HG ++G +SC C FRR
Sbjct: 16 HGTHFGIVSCRACAAFFRR 34
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -1
Query: 328 DVPVQIPSYVKRNLVVRNSNNCVS 257
++P +IPSYV+R++VV S VS
Sbjct: 185 EIPFKIPSYVQRDVVVCTSPLFVS 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,527,268
Number of Sequences: 27780
Number of extensions: 151286
Number of successful extensions: 635
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -