Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b04
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical pr...    27   9.3  
DQ904352-1|ABI78934.1|  564|Caenorhabditis elegans malignant bra...    27   9.3  
AC024792-4|AAF60679.2|  544|Caenorhabditis elegans Hypothetical ...    27   9.3  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   9.3  

>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
            K04B12.1 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 485  WNSI-MCDPHYCNSRYLLRLAVSYSTVS*IRRKFNTNNCLPRIMDSLNNDTLLGS 646
            W+S+  C P Y +S+Y      S  T++  ++  N +N LP+ +  +    LL S
Sbjct: 1492 WSSLDRCSPIYSSSKYYHLTNPSSGTMTFKKKSSNDSNLLPKSIPEVYLTRLLTS 1546


>Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical
           protein T05D4.4 protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 437 LIQQNGSKNPFTLEGIWNSIMCDPH 511
           L+    S++PFT  G+W     DPH
Sbjct: 565 LVHTPRSRSPFTKPGLWEPNPADPH 589


>DQ904352-1|ABI78934.1|  564|Caenorhabditis elegans malignant brain
           tumor repeat protein1 protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -3

Query: 675 RRDRRME--SVLEPSRVSLLRLSMILGRQLLVL 583
           R ++R+E  + LEP+ + + R+  ILGR+L+V+
Sbjct: 243 RLNQRVELLNYLEPTEIRVARILRILGRRLMVM 275


>AC024792-4|AAF60679.2|  544|Caenorhabditis elegans Hypothetical
           protein Y48G1A.6 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -3

Query: 675 RRDRRME--SVLEPSRVSLLRLSMILGRQLLVL 583
           R ++R+E  + LEP+ + + R+  ILGR+L+V+
Sbjct: 243 RLNQRVELLNYLEPTEIRVARILRILGRRLMVM 275


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 485  WNSI-MCDPHYCNSRYLLRLAVSYSTVS*IRRKFNTNNCLPRIMDSLNNDTLLGS 646
            W+S+  C P Y +S+Y      S  T++  ++  N +N LP+ +  +    LL S
Sbjct: 1494 WSSLDRCSPIYSSSKYYHLTNPSSGTMTFKKKSSNDSNLLPKSIPEVYLTRLLTS 1548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,003,231
Number of Sequences: 27780
Number of extensions: 236041
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)