Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21a19
         (746 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing...   112   1e-24
AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens ...   112   1e-24
AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product pr...    80   7e-15

>BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing 1
           protein.
          Length = 353

 Score =  112 bits (270), Expect = 1e-24
 Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 5/193 (2%)
 Frame = +2

Query: 182 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 352
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAA 98

Query: 353 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 532
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 99  --------------LKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 533 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT--SFSVVFN 706
            I++D+  T+ +KTR ++R+LPI  TCKA L D+ + A    + +F K P   +F +V+ 
Sbjct: 143 HILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF-KAPNKGTFQIVYK 201

Query: 707 KRFNNSVSRDLII 745
            R N+ V+R+ +I
Sbjct: 202 SRNNSHVNREEVI 214


>AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20274 fis, clone HEP02123. ).
          Length = 353

 Score =  112 bits (269), Expect = 1e-24
 Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 5/193 (2%)
 Frame = +2

Query: 182 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 352
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQRPSGSEGEDDDAEAA 98

Query: 353 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 532
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 99  --------------LKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 533 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT--SFSVVFN 706
            I++D+  T+ +KTR ++R+LPI  TCKA L D+ + A    + +F K P   +F +V+ 
Sbjct: 143 HILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF-KAPNKGTFQIVYK 201

Query: 707 KRFNNSVSRDLII 745
            R N+ V+R+ +I
Sbjct: 202 SRNNSHVNREEVI 214


>AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product
           protein.
          Length = 242

 Score = 80.2 bits (189), Expect = 7e-15
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
 Frame = +2

Query: 440 LRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKA 619
           +R +RFQ VE+GA+N +F++T    PE+L   I++D+  T+ +KTR ++R+LPI  TCKA
Sbjct: 1   MRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKA 60

Query: 620 NLPDIMESAGKLFDKYFLKEPT--SFSVVFNKRFNNSVSRDLII 745
            L D+ + A    + +F K P   +F +V+  R N+ V+R+ +I
Sbjct: 61  FLEDMKKYAETFLEPWF-KAPNKGTFQIVYKSRNNSHVNREEVI 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,048,291
Number of Sequences: 237096
Number of extensions: 1786407
Number of successful extensions: 2652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2652
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)