Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21a07
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 37 0.003
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 36 0.004
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.094
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 31 0.16
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 31 0.22
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 30 0.29
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 30 0.29
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 30 0.38
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 29 0.50
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.50
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.88
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.2
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.2
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 28 1.2
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 1.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 28 1.5
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 27 2.0
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 27 2.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 3.5
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 3.5
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 3.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 3.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 4.7
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.7
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 26 4.7
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 6.2
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 8.2
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 8.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 8.2
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 8.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.2
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 252 SRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVES 431
S +R + T EEK + +NR AA R RKK + +++++ + NE L+++V
Sbjct: 461 SSRRNSKNETDEEKRKSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQV-- 518
Query: 432 LKALNERLISENTAL 476
AL E ++S T L
Sbjct: 519 -SALREEIVSLKTLL 532
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +3
Query: 285 EEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISE 464
+E ++K +NR A + R RK+ + +E+Q+ KE++ T E + L+ +L E
Sbjct: 76 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 135
Query: 465 NTALREAA 488
L++ +
Sbjct: 136 LRILKDGS 143
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.094
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 312 KNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREA 485
KN A + + + K+ E + FK+ L EVE+LK E+ ++NT L A
Sbjct: 1359 KNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAA 1416
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 312 KNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLK 437
KN TSR + DE+E Q++ ++NE+ +++ LK
Sbjct: 130 KNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELK 171
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/106 (21%), Positives = 41/106 (38%)
Frame = +3
Query: 207 EEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIR 386
EED D + + AS S KR +K +KK A + K K + E + +
Sbjct: 147 EEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKK 206
Query: 387 DFKEMNERLTSEVESLKALNERLISENTALREAAAAQSVPGGQGPA 524
D + +++ S + ++ I ++ + V G PA
Sbjct: 207 DKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRPA 252
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 291 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENT 470
K K +NR AAQ R +KK + ++ Q+ + N+ L ++S L E +I T
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKEL---LQSANDLREEIIKLRT 179
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 30.3 bits (65), Expect = 0.29
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 285 EEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISE 464
+EK +R +NR+AA R +KK + E+E E ++RL + L+ RL S+
Sbjct: 10 DEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQ 69
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 363 DEMESQIRDFKEM---NERLTSEVESLKALNERLISENTALREAA 488
D + QIR +KE+ ++ + ++ L+ NERL+SEN LR A
Sbjct: 12 DLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTA 56
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 29.9 bits (64), Expect = 0.38
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 291 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLIS-EN 467
K R+K + + RDR A D S E +T E +LNE+L+S +
Sbjct: 741 KRHRRKQSSSIPVLDLRDRSSAISDLSLSTASSVLEAQSLITPERPKRPSLNEKLLSLDG 800
Query: 468 TALREAAAAQSVPGGQGPAESTP 536
T++R A QS + AE +P
Sbjct: 801 TSIR--LAGQSF-NYENSAEDSP 820
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 29.5 bits (63), Expect = 0.50
Identities = 26/107 (24%), Positives = 45/107 (42%)
Frame = +3
Query: 183 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKM 362
+PN L+++ S+ L +P PS R L +E Q L QT+++ +M
Sbjct: 80 LPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQE--QTMLLVRHRQLQTAQN-YLTEM 136
Query: 363 DEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAAQSV 503
E +I++ NERL + E ++ A AA + +
Sbjct: 137 KEALGRIKNELSTNERLDTSAREALVKQESELTVKIAQFTAAISNGI 183
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.5 bits (63), Expect = 0.50
Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +3
Query: 183 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSR----DRK 350
+ +N +K+E + + V+ RK RL E+++Q K+ N++ + + DR+
Sbjct: 445 ITSNSQLKDEITSLKQTVSESEAERK-RLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQ 503
Query: 351 KAKMDE----MESQIRDFKEMNERLTSEVESLKALNERLISENTALREA 485
+ +E E ++ + +++ T + + L+ L E+L E L++A
Sbjct: 504 LKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQA 552
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 28.7 bits (61), Expect = 0.88
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 322 TRFFSFFLCIFSSHVRWSSRRFLD--GDGDATSRIISESSS 206
TRFF + S + +W++++F + D TS + +++SS
Sbjct: 695 TRFFRVIYIVLSKYTQWTTQKFFEEANKQDDTSEVQNDNSS 735
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 428 ELESFEREVD*REHSATRSGGGAERPGW 511
ELE+FE+E+ E S T++ G +++P +
Sbjct: 341 ELENFEKEIFKAEVSETKNNGNSDKPSF 368
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 291 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISEN 467
K+ +KKLK+ D+K ++E E +++ E E+ ++ S L E+ ++++
Sbjct: 4 KLSKKKLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQS 62
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 372 ESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAAQSV 503
++ + + K N+ LTS++ +L+ L ENT L EA + V
Sbjct: 456 QNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRV 499
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/80 (20%), Positives = 39/80 (48%)
Frame = +3
Query: 225 ILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMN 404
+LDV SP S R + ++ ++ KK+ + R + ++E+Q F+++
Sbjct: 211 LLDVHSPDNSNHRTMLNINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQHHSFQQIC 270
Query: 405 ERLTSEVESLKALNERLISE 464
+ L +E+ + ++ +S+
Sbjct: 271 QTLRKRLENDSSTTKQRLSK 290
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 213 DSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAK 359
D + ++ S PS+K + D +EK + K K R A S + KK+K
Sbjct: 446 DVEETVETISEKPSKKEKKDK---KEKKKEKSKKKRSADDASEEVKKSK 491
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 183 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNR 320
+ N EE+ D + P S LDH + E++MQ+ KN+
Sbjct: 318 IKNQLFKSEEEKDPVGKQKLPLESSLSPLDHSSAEKEMQKAPAKNK 363
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 357 WLSFCREKSVLPRDFSVSFFAFFLPMSDGPVAVSWTET 244
WL R +LPR + + FL DG + + W +T
Sbjct: 502 WLHVIRSLELLPRPLGTDWSSVFLQKFDGTITI-WPKT 538
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +3
Query: 309 LKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAA 488
++ + Q ++ ++ +E++S +DF E+++ + L L + S+N EA
Sbjct: 132 MEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVILKVERELHTLRQNTPSQNEQ-AEAT 190
Query: 489 AAQSVP 506
++ +P
Sbjct: 191 PSKEIP 196
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +3
Query: 207 EEDS-DMILDVA-SPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDR-----KKAKMD 365
EED D LD + SP S+K ++ + +E +R+K K + + +D+ K+ K+D
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLD 167
Query: 366 EMESQIRDFK 395
+ +Q R K
Sbjct: 168 DSHTQKRKRK 177
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 375 SQIRDFKEMNERLTSEVESLKALNERLISENTALRE 482
S+ + F+++ RL K + ERL++EN +E
Sbjct: 411 SEYQGFQKLAARLNCSYADAKRIEERLVNENIIYKE 446
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 282 WEEKMQRKKLKNRVAAQTSRDRKKAKMDEM 371
WE+ + +A +TSRD KK K +++
Sbjct: 127 WEDDLASNSSPASIAKKTSRDSKKRKREDL 156
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 336 SRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAA 494
+++RK+ + ++ K+ E L S +ES + N + +T+L +A+A
Sbjct: 72 TKERKEMLKKKCTDELESSKKKIEELVSSIESFQGENGEAKTGSTSLTRSASA 124
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 348 KKAKMDEMESQIRD-FKEMNERLTSEVES 431
K +K E ES ++D EMN+RL ++ES
Sbjct: 510 KLSKQVEEESSMKDDLTEMNQRLKEQIES 538
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +3
Query: 285 EEKMQRKKLKNRVAAQTSRDRKKAKMDE----MESQIRDFKEMNERLTSEVESLKALNER 452
++K ++KK K A +DRK K +E + S + + N+ + + A +
Sbjct: 176 KDKKKKKKSKENDDAP-KKDRKTRKKEEKARKLASMLESENKDNDANAAPLNKTDAFKDG 234
Query: 453 LISENTALREAAAAQSVPGGQGPAE 527
L S A+ + P G PA+
Sbjct: 235 LPSGRLIFAYASGQKVAPDGSNPAD 259
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.7
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 426 PPHL*DAHSFL*NPLSDSPFRPSWLSFCREKSVLPRDFSVSFFAFFLPM-SDGPVAVSWT 250
P L A FL LSD F S E + P+ V + +F P SDGP+ V W
Sbjct: 166 PSRLLQAQCFL--ELSDKRFEESHT----EIQIGPKFTVVLYTSFSQPSKSDGPLDVRWQ 219
Query: 249 ET 244
ET
Sbjct: 220 ET 221
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 449 LVQSFQ--ALHLTCETLIHFFEIPYLTLHF-VHLGFLS 345
L+QS L+ CE + ++EIP L + F H F S
Sbjct: 716 LIQSLSNGRLYSQCEAMTEYYEIPVLLIEFEQHQSFTS 753
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 288 EKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALN-----ER 452
E +Q + R K+D++ +IRD + ++E +++ + + LN +
Sbjct: 99 ETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDE 158
Query: 453 LISENTALREAAAAQSVPGGQGPAESTP 536
L +E L++ + G + P TP
Sbjct: 159 LANELDELQQMELDSKMLGAEKPPVHTP 186
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 288 EKMQRKKLKNRVAAQTSRDRKKAKM-DEMESQIRDFKEMNERLTSEVE 428
+K+Q + KN + T ++K A M +E+ESQI E+L S VE
Sbjct: 381 KKIQETEKKNAMIEMT--EQKIAGMREELESQISSITMEFEKLKSHVE 426
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 387 PLSDSPFRPSWLSFCREKSVLPRDFSVSFFAFFLPMSDGP 268
P D P +P W+ F ++ V D AF LP+++ P
Sbjct: 158 PPDDDPEKPDWIHFEQDDHV---DVICGKEAFLLPLNEYP 194
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 284 GRKNAKKETEKSRGSTDFSRQKESQDGRNGES 379
G KN+ + SR S+D +K S+D R+ +S
Sbjct: 30 GLKNSTLSSTSSRKSSDEKSRKSSEDKRSPQS 61
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/32 (31%), Positives = 23/32 (71%)
Frame = +3
Query: 372 ESQIRDFKEMNERLTSEVESLKALNERLISEN 467
ES++ + KE+N +L+ ++++L++ IS+N
Sbjct: 849 ESKVSELKEVNGKLSLDLKNLRSSLNVAISDN 880
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,173
Number of Sequences: 5004
Number of extensions: 47915
Number of successful extensions: 223
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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