Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21a04
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 311 2e-84
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 311 2e-84
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 311 2e-84
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 311 2e-84
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 308 1e-83
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 218 1e-56
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 69 2e-11
BC110387-1|AAI10388.1| 563|Homo sapiens hypothetical protein LO... 30 6.6
BC010431-1|AAH10431.1| 264|Homo sapiens HOM-TES-103 protein pro... 30 6.6
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 311 bits (763), Expect = 2e-84
Identities = 142/190 (74%), Positives = 166/190 (87%)
Frame = +3
Query: 108 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 287
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 288 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 467
R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64 RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123
Query: 468 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 647
EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 648 CDGEPIKREE 677
C+GEPIKRE+
Sbjct: 184 CEGEPIKRED 193
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 311 bits (763), Expect = 2e-84
Identities = 142/190 (74%), Positives = 166/190 (87%)
Frame = +3
Query: 108 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 287
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 288 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 467
R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64 RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123
Query: 468 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 647
EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 648 CDGEPIKREE 677
C+GEPIKRE+
Sbjct: 184 CEGEPIKRED 193
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 311 bits (763), Expect = 2e-84
Identities = 142/190 (74%), Positives = 166/190 (87%)
Frame = +3
Query: 108 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 287
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 288 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 467
R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64 RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123
Query: 468 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 647
EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 648 CDGEPIKREE 677
C+GEPIKRE+
Sbjct: 184 CEGEPIKRED 193
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 311 bits (763), Expect = 2e-84
Identities = 142/190 (74%), Positives = 166/190 (87%)
Frame = +3
Query: 108 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 287
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 288 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 467
R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64 RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123
Query: 468 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 647
EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183
Query: 648 CDGEPIKREE 677
C+GEPIKRE+
Sbjct: 184 CEGEPIKRED 193
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 308 bits (756), Expect = 1e-83
Identities = 141/190 (74%), Positives = 165/190 (86%)
Frame = +3
Query: 108 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 287
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 288 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 467
R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64 RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123
Query: 468 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 647
EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVET PSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCIVAPDTVIH 183
Query: 648 CDGEPIKREE 677
C+GEPIKRE+
Sbjct: 184 CEGEPIKRED 193
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 218 bits (533), Expect = 1e-56
Identities = 96/129 (74%), Positives = 108/129 (83%)
Frame = +3
Query: 291 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 470
+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62
Query: 471 GLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHC 650
G+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC
Sbjct: 63 GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 122
Query: 651 DGEPIKREE 677
+GEPIKRE+
Sbjct: 123 EGEPIKRED 131
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 68.9 bits (161), Expect = 2e-11
Identities = 28/31 (90%), Positives = 31/31 (100%)
Frame = +3
Query: 585 FKVVETDPSPFCIVAPDTVIHCDGEPIKREE 677
FKVVETDPSP+CIVAPDTVIHC+GEPIKRE+
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPIKRED 31
>BC110387-1|AAI10388.1| 563|Homo sapiens hypothetical protein
LOC25900 protein.
Length = 563
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -2
Query: 676 SSRLIGSPSQC----ITVSGATMQNGDGSVSTTLNSTARMPPRTM 554
S+R++GSP++ + S A++ + S STT +S+AR P T+
Sbjct: 152 SARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTI 196
>BC010431-1|AAH10431.1| 264|Homo sapiens HOM-TES-103 protein
protein.
Length = 264
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -2
Query: 676 SSRLIGSPSQC----ITVSGATMQNGDGSVSTTLNSTARMPPRTM 554
S+R++GSP++ + S A++ + S STT +S+AR P T+
Sbjct: 152 SARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTI 196
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,883,814
Number of Sequences: 237096
Number of extensions: 2119381
Number of successful extensions: 4443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4443
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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