Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20p14
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   1.6  
11_04_0320 + 16354122-16354226,16354652-16356859                       27   3.6  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 26   6.3  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 26   6.3  
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    26   6.3  
06_03_0889 + 25702777-25703439                                         26   6.3  
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    25   8.3  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 97  MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 240
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


>11_04_0320 + 16354122-16354226,16354652-16356859
          Length = 770

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 115 LAVFSNILGVSIFLLVILY-HYINANSSK*-YRSIAAIVKALVSLIKKCALY*DVNKSF 285
           L  FS+IL V   ++ +     I+A + K  + S   +  ALV++  KC    D NK+F
Sbjct: 393 LFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 46   LIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 138
            L+H+ +  I FK  +   + D  L  FSNIL
Sbjct: 1010 LLHSVDGSINFKPFDFDKLADDMLQEFSNIL 1040


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 46   LIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 138
            L+H+ +  I FK  +   + D  L  FSNIL
Sbjct: 1011 LLHSVDGSINFKPFDFDKLADDMLQEFSNIL 1041


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 142 VSIFLLVILYHYINANSSK*YRSIAAIVKALVSLIKKCAL 261
           +++  L +L +Y    SSK   SI +  KA++SL   C+L
Sbjct: 399 IAVLGLFVLIYYSPGGSSKKGMSIPSGAKAVLSLALLCSL 438


>06_03_0889 + 25702777-25703439
          Length = 220

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 277 YLHLNIKHIFLLETPMLLQWPR 212
           Y+HL I+  F L TP+ L  PR
Sbjct: 60  YMHLVIRETFRLHTPLPLLLPR 81


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 84  IQSKNDHRHPARSFLQHFGSLHILISY 164
           ++ KND+      F QHFGS   LIS+
Sbjct: 181 LEIKNDNDAGKHFFHQHFGSTKPLISF 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,053,746
Number of Sequences: 37544
Number of extensions: 118196
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)