Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20p14
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical pr...    48   2e-06
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   3.3  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   3.3  
AF039052-10|AAF98634.1|  536|Caenorhabditis elegans Hypothetical...    27   3.3  
Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    26   4.4  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    25   7.6  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    25   7.6  

>Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical
           protein T07A5.5 protein.
          Length = 35

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 17/31 (54%), Positives = 28/31 (90%)
 Frame = +1

Query: 97  MITDIQLAVFSNILGVSIFLLVILYHYINAN 189
           MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1   MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 46   LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 144
            +I + N+ I    S L MI++ + A+FSNI+GV
Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 46   LIHNFNNLIQFKTSNLKMITDIQLAVFSNILGV 144
            +I + N+ I    S L MI++ + A+FSNI+GV
Sbjct: 2360 VISSLNSTITSDAS-LDMISESEQAIFSNIIGV 2391


>AF039052-10|AAF98634.1|  536|Caenorhabditis elegans Hypothetical
           protein T22D1.1 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 7   PVSTRIQKNLNTKLIHNFNNLI-QFKTSNLK--MITDIQLAVFSNILGVSIFLLVILYHY 177
           PVS  ++K+ NT+   N  N I + K S  K  +I D Q  + S +L VS   +   Y+Y
Sbjct: 10  PVSQLLKKSSNTRTSENTTNYISRIKNSIPKSGVIIDPQRRL-SRVLPVSHVFITSAYYY 68

Query: 178 INANS 192
             + S
Sbjct: 69  PTSKS 73


>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 31  NLNTKLIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 138
           N+NT +     N I F +  L ++    L  FSN++
Sbjct: 241 NMNTSMAVTLANFIPFISDGLSLVQPWLLVTFSNVM 276


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 181 LCSDTG*LIRIWRLPKCWRKLRAG 110
           LC   G L  + R PK W KL++G
Sbjct: 336 LCRSQGTLSDLLRNPKPWNKLKSG 359


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 181 LCSDTG*LIRIWRLPKCWRKLRAG 110
           LC   G L  + R PK W KL++G
Sbjct: 345 LCRSQGTLSDLLRNPKPWNKLKSG 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,554,950
Number of Sequences: 27780
Number of extensions: 118107
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)