Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o16
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    53   3e-08
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    27   1.1  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   1.1  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   2.0  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   4.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   4.6  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   8.1  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 31/113 (27%), Positives = 52/113 (46%)
 Frame = +1

Query: 151 MKAVLATVISLALTTVVIGNAYYXKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLVGKML 330
           MK +L  + SL L  + +  + Y     Y + V ++ S   + +       L   +   L
Sbjct: 1   MKFILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSPVHITIGLNVCLCLFFAIANAL 60

Query: 331 RKIFFGQLRPAEFEHLIERXXYAITETCLAFTVFRDDFNPKFIALFTLLLFLK 489
           + + FG L+  E E L E+    +TE  LA TVFR+  +  F  L + L+F +
Sbjct: 61  KTLLFGSLQTFELELLYEQFWITLTEIMLAITVFREAISISFFMLLSTLMFAR 113


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 258 KFKSQHGSDVFASVYFS-FIGGKNAKENILWSTS 356
           KF+++HG DV   V  +   GG     +++W  S
Sbjct: 59  KFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGS 92


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
 Frame = +1

Query: 97  INEAHEDIISKELLK--TIKMKA----VLATVISLALTTVVIGNAYYXKKQFYP--SIVY 252
           ++E   D+ SK + K  ++++ +    + +TVIS +L+TVVIGN    K + YP  S   
Sbjct: 372 VDEEDTDVQSKPVRKNPSVELNSTDTLLSSTVISKSLSTVVIGNE-TGKSESYPATSTRS 430

Query: 253 LTNSNPSMAVMYLQAFI 303
             + +PS +  Y  A I
Sbjct: 431 FNDISPSSSSSYSTAQI 447


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 138 KNYQNEGS--VSDGDQSRANHCGYRQCILPXETVLPFDSLFNKFKSQ 272
           +NY  EG   V    +++ +H GY +CIL  ++   ++    K  S+
Sbjct: 276 RNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSE 322


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 157 AVLATVISLALTTVVIGNAYYXKKQ 231
           +VLAT++S A T ++IG+  Y  ++
Sbjct: 238 SVLATLLSFAPTLLIIGSVIYLSRR 262


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 386 LSIKCSNSAGRS*PKNIFLSI 324
           L ++CS+   +S PKN+FLS+
Sbjct: 335 LYLRCSSCKLKSIPKNVFLSL 355


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 232 FYPSIVYLTNSNPSMAVMYLQAFILVLLVGKMLRKIFFGQLRPAEFE 372
           FYP  + + N  P++A+MY       ++ G M       Q +  EFE
Sbjct: 221 FYP--LSIINDEPNLALMYRLKSFAKVIDGLMDEAFSIAQAQGCEFE 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,641
Number of Sequences: 5004
Number of extensions: 33273
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)