Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o09
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...   184   2e-47
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    31   0.24 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    29   0.55 
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   2.2  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    27   2.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    27   3.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   3.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.7  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   8.9  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   8.9  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score =  184 bits (447), Expect = 2e-47
 Identities = 93/212 (43%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
 Frame = +3

Query: 123 VPPYGERKGWVPRRDEDFADGGAFPEIHVAQYPLGMG-MRGKESTSNALAVQLDESGRVK 299
           +PPYG+RKGW P   EDF DGGAFPEIHVAQYPL MG  R  +S  N LA+Q+  SG V 
Sbjct: 43  IPPYGQRKGWFPSSPEDFGDGGAFPEIHVAQYPLDMGRKRSAKSAGNTLALQVTSSGAVD 102

Query: 300 YSAIARQGHSADKIIYSKLTDLLPSEV-LAEDDPTLQKPDEDDIQDITEKTKLALEKLTN 476
           Y+AIARQGH   +++ +   DL+P    L   + +L+KP ++  Q++  KTKLAL+K+ +
Sbjct: 103 YNAIARQGHEHGELVQASFRDLIPLRARLGVGEISLEKPSDEQKQEVANKTKLALQKILS 162

Query: 477 AKISXXXXXXXXXXXXXXQ-YIRYTPAQQGGSYNSGAKQRVIRMVEAQSDPMEPPRFQIN 653
            +I+                YIRYTP+ Q G   S  KQR+I+MV A+ DPMEPP+F+ +
Sbjct: 163 KQIAQSQPKSAVVQQRDDPVYIRYTPSNQMGQALS--KQRIIKMVTAEQDPMEPPKFR-H 219

Query: 654 RKIPRXXXXXXXXXXXXXXRRVSVRQXXDWKV 749
           +K+PR              R+VS ++  DW++
Sbjct: 220 KKVPRGPPSPPPPVLHSPPRKVSAQEQQDWQI 251


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 473 GQFLECEFSLLGDILNVVLVWFL 405
           G+F++ EFSL G+I N  + W+L
Sbjct: 230 GKFIKVEFSLSGEISNAAIEWYL 252


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +1

Query: 127 HLTVRGKDGYLEETKILQMAEHSQRSMWHSTRLVWECEARRVLQTLLLSSWMSLGESNIL 306
           H+ +    G+L  TKI +M E++ +          + EA+  L++ + +   ++ E N++
Sbjct: 503 HIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVM 562


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 372 SEVLAEDDPTLQKPDEDDIQDITEKTKLALEKLTN 476
           +E  ++D+P   + +E++ +DITE++ L   K+++
Sbjct: 282 AEETSDDEPLSSEDEENEDEDITEESNLRKRKVSD 316


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 173 IFVSSRYPSFPLTVRWHTGLGHYKSTPDTFSLQLIISIPHLLTRGRQQARQR 18
           I +SS  P  P T++W+    +  + P  F +     I  LL   R++   R
Sbjct: 212 IQLSSTSPVIPFTLKWNNSCPNPLTNPQEFRVAASAKIQQLLQGNREKFLSR 263


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -1

Query: 295 TLPDSSSWTARAFEVLSLPRIPIPSGYCATWISGNAPPSAKSSSLRGTHPFLSP*GGTLV 116
           ++P SSS  A +  + S   IP  S    +  S  A  S+ SSS   +  F SP   + +
Sbjct: 21  SIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFI 80

Query: 115 WDTTRALPTRLAFNSSSLS 59
                +   + + +S+SL+
Sbjct: 81  TSLVSSSSQQSSSSSASLT 99


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +3

Query: 243 KESTSNALAVQLDESGRVKYSAIARQGHSADKIIYSKLTD----LLPSEVLAEDDPTLQK 410
           K ++S +   +L +      SA+  +  +   ++  KL D    L+P+   A  DP L +
Sbjct: 34  KHNSSKSFVCELAKIEASLKSALTAELKNIANVLEPKLIDNQYSLIPALPSARTDPLLSQ 93

Query: 411 PDEDDIQDITEKTKL 455
            +  +IQ+ TE  KL
Sbjct: 94  LNSLNIQNATEDEKL 108


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 212  CHMDLWECSAICKIFVSSRYPSFP-LTVRWHTGLG 111
            CH D W   A  +++V   Y ++  L + +HT  G
Sbjct: 1099 CHTDPWVSLAALEVYVRRAYRAYSVLEINYHTEAG 1133


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 366  LPSEVLAEDDPTLQKPDEDDIQDITEKTKLALEKLTNAKI 485
            L S+++A +  T Q PD  +++ I+ + +   EKL  A++
Sbjct: 925  LQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAEL 964


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 253 VLSLPRIPIPSGYCATWISGNAPPSAKSSSLR 158
           +LS    P+PS   ++W    +P S ++SS++
Sbjct: 196 ILSAIPSPLPSSSTSSWADEPSPSSTETSSIK 227


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 213 VPHGSLGMLRHLQNLRLFEVPIL 145
           V +G   M++H+QN   F +P++
Sbjct: 764 VKNGCSNMVKHIQNCHKFNIPVV 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,532
Number of Sequences: 5004
Number of extensions: 63177
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)