Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o09
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.33 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.58 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
 Frame = +3

Query: 120 SVPPYGERKG-WVP-RRDEDFADGGAFPEIHVAQYPLGMGMRGKESTSNALAV-QLDESG 290
           ++  YG  KG  VP ++ ED  D G   +  ++Q+    G   K+      +V Q+ E G
Sbjct: 198 AIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNYVYRSVDQVLEDG 257

Query: 291 RVKYSAIARQGHSADKIIYSKLTDLLPSEVLAEDDPTL----QKPDEDDIQDITEKTKLA 458
           ++K +   R  +   K+    +T   P + +      +    Q+PDE+ + D   K   A
Sbjct: 258 KLKPNKKVRISNEMSKVKVIDMTG--PEQRILSGYHAIAGGQQRPDENVVTDKKSKVNFA 315

Query: 459 LEKL 470
           L +L
Sbjct: 316 LPEL 319


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 125 HTGLGHYKSTPDTFSLQL 72
           HTGLGHY   PD   + L
Sbjct: 275 HTGLGHYGHHPDPGEVDL 292


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 313 AIAEYLTLPDSSSWTARAFEVLSLPRIPIPSG 218
           A  E  TLPD   W+++   +LS+  + I  G
Sbjct: 9   AFKEIKTLPDRGMWSSKIEFILSVVGLAIGLG 40


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 313 AIAEYLTLPDSSSWTARAFEVLSLPRIPIPSG 218
           A  E  TLPD   W+++   +LS+  + I  G
Sbjct: 62  AFKEIKTLPDRGMWSSKIEFILSVVGLAIGLG 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 188 SAICKIFVSSRYPSFPLTVRWHTGLG 111
           SAI K  V S    F   + WHT  G
Sbjct: 119 SAILKCVVPSFVADFVKVLSWHTDQG 144


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 609 EAQSDPMEPPRFQIN 653
           E +S+P+EPPR + N
Sbjct: 332 ERRSEPVEPPRRKNN 346


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 229 IPSGYCATWISGN 191
           +P+G    W+SGN
Sbjct: 340 VPNGSVTNWVSGN 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,702
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)