Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o08
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    32   0.51 
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284...    31   1.2  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    29   2.7  
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    29   3.6  
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    29   3.6  
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603...    28   8.3  

>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 584 LKDVVLALKWVQRNVDTFGGDPNNVTIFGNSSG 682
           + D    + +V  N+ ++GGDPN + + G S+G
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAG 226


>05_07_0228 -
           28526885-28527046,28527151-28527241,28528315-28528455,
           28528560-28528625,28529180-28529317,28529759-28529860,
           28530156-28530236,28530314-28530383,28530598-28530674,
           28531035-28531483
          Length = 458

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 500 VVFVTCG-FRLGAFGFLSINDFTAPGNCGLKDVVLALKWVQRNVDTFGGDPNNVTIFGNS 676
           V FVT G + +G F   +I+D  +  + G+        +V   V  +GGDPN + + G S
Sbjct: 215 VAFVTGGAWIIGNFPQGTISDMVSDASDGIS-------FVCETVGAYGGDPNQIYLMGQS 267

Query: 677 SG 682
           +G
Sbjct: 268 AG 269


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 218 PYAKPPVGHLR-FLPPLPATPWTNEKDCTQDPPMALTW 328
           P+  PPV   R F  P PA P T +      PP   +W
Sbjct: 240 PHLPPPVSQRRQFQAPPPAAPTTTKTAAAPAPPPTASW 277


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 390 GVETSIYRQSSEPII--CSYLNDQVKAIGGSWVQSFSLVQGVAGRGGKNRRCPTGGFAYG 217
           G+ T+ + +S+ P+    S L  +       W++ ++      G GG+NRR   GG  +G
Sbjct: 689 GLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAARSSFGGGGGRNRR-SGGGARFG 747


>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 584 LKDVVLALKWVQRNVDTFGGDPNNVTIFGNSSG 682
           ++D    + +V  N+ ++GGDP  + + G S+G
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAG 234


>06_03_1360 +
           29558789-29559020,29559203-29559378,29560285-29560346,
           29560426-29561212,29561516-29562244
          Length = 661

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 113 AKSEKTKLRVETKEGPICGYKETTNE 190
           A+ E+ KLRV+ +E  + G K+T N+
Sbjct: 573 AREEEDKLRVQAEEAALLGKKQTKNK 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,940
Number of Sequences: 37544
Number of extensions: 425543
Number of successful extensions: 1040
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)