Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o06
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...   237   4e-63
Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical pr...    82   3e-16
U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoy...    69   3e-12
U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoy...    69   3e-12
U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    66   2e-11
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    66   2e-11
M98552-9|AAA28210.3|  569|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    29   3.2  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   7.3  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    27   9.7  

>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score =  237 bits (581), Expect = 4e-63
 Identities = 114/191 (59%), Positives = 143/191 (74%), Gaps = 1/191 (0%)
 Frame = +3

Query: 126 LEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHPEVVEAARE 305
           L++ L  IK A T+K ERV+   Q   V+V G+    +NFCANNYLGLS+HPEV+ A ++
Sbjct: 33  LKNELAGIKNAGTFKTERVIQGRQGVLVKVTGSDKPVINFCANNYLGLSSHPEVIAAGQK 92

Query: 306 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPED 485
            L+ +GAGLSSVRFICGTQ IHKELE +++QFHG EDTILY +CFDAN G+FE M   +D
Sbjct: 93  ALETHGAGLSSVRFICGTQDIHKELEQKIAQFHGTEDTILYAACFDANGGIFEVMTGEQD 152

Query: 486 AVFSDALNHASIIDGIRLCKAQKYRYPHRDLTELEHLLAHSE-ARIKLIVTDGVFSMDGT 662
           ++ SD LNHASIIDGIRL KA++ RY H DL +LE  L  +E +R +LIVTDGVFSMDG 
Sbjct: 153 SIISDELNHASIIDGIRLSKAKRLRYKHLDLGDLESKLKEAEDSRFRLIVTDGVFSMDGD 212

Query: 663 VAPIKGLRDLA 695
           VAP+  +  LA
Sbjct: 213 VAPLGDITSLA 223


>Z81127-5|CAB03390.2|  512|Caenorhabditis elegans Hypothetical
           protein T22G5.5 protein.
          Length = 512

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
 Frame = +3

Query: 219 GAQGEFLNFCANNYLGLSNHPEV-VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLS 395
           G + E +N  + NYLG S+   V  EAA   + KYG      R   G    HK +E+ ++
Sbjct: 131 GTESEVINLGSYNYLGFSHRSGVCAEAAAAHIDKYGINCGGSRQEIGNHVAHKSVESTIA 190

Query: 396 QFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQKYRYPHRD 575
           Q+   ED I++   F  N+    S++     + SD LNHAS++ G RL  A    + H D
Sbjct: 191 QYLNVEDAIVFPMGFATNSMNIPSLVDKGSLILSDRLNHASLVTGCRLSGAHTVVFRHND 250

Query: 576 LTELEHLLAHSEARIK----------LIVTDGVFSMDGTV 665
            ++ E  L  +   +           LI+ +G++SM+GT+
Sbjct: 251 ASDCERKLRDALCGVSPKTGEKYNKVLIIIEGIYSMEGTI 290


>U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform b protein.
          Length = 434

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 36/131 (27%), Positives = 63/131 (48%)
 Frame = +3

Query: 231 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGR 410
           ++LN  + N+L       + + A++ + KYG G    R   GT  +H +LE  L++F G 
Sbjct: 63  KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGC 122

Query: 411 EDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQKYRYPHRDLTELE 590
           E+ +LY   F   +    +     D +F D   + +I  G++  +++   + H D+  LE
Sbjct: 123 EEAVLYSYGFATVSSAIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRVEYFKHNDMEHLE 182

Query: 591 HLLAHSEARIK 623
            LL   E R K
Sbjct: 183 RLLLEQEQRDK 193


>U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform a protein.
          Length = 458

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 36/131 (27%), Positives = 63/131 (48%)
 Frame = +3

Query: 231 EFLNFCANNYLGLSNHPEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGR 410
           ++LN  + N+L       + + A++ + KYG G    R   GT  +H +LE  L++F G 
Sbjct: 87  KYLNMASTNFLSFIGVKRIEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGC 146

Query: 411 EDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIRLCKAQKYRYPHRDLTELE 590
           E+ +LY   F   +    +     D +F D   + +I  G++  +++   + H D+  LE
Sbjct: 147 EEAVLYSYGFATVSSAIPAYAKKGDVIFVDEGVNFAIQKGLQASRSRVEYFKHNDMEHLE 206

Query: 591 HLLAHSEARIK 623
            LL   E R K
Sbjct: 207 RLLLEQEQRDK 217


>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
 Frame = +3

Query: 111 KLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHP-EV 287
           K+RDV E  +  +  A     +RV      T     G +   +N  + NYLG +      
Sbjct: 135 KVRDVFERPICSVPGATVDLVDRVSHDGNWT-YEYPGTRTNVINVGSYNYLGFAQSAGPC 193

Query: 288 VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFES 467
            E +   + + G    +     G      +LE  +++F G ED I +   F  N+     
Sbjct: 194 AEQSASSIDREGLSCCTTVHERGRSVSQAKLEKLVAEFLGVEDAICFSMGFATNSMNAPC 253

Query: 468 MLTPEDAVFSDALNHASIIDGIRLCKAQKYRYPHRDLTELEHLL----------AHSEAR 617
           ++     + SD  NHAS+I G RL  A    + H D+  LE +L           H   +
Sbjct: 254 LVDKHSLIISDKYNHASLILGCRLSGASTKVFEHNDMESLERILRDAIAYGNPKTHRPYK 313

Query: 618 IKLIVTDGVFSMDGTVAPIKGL 683
             LI+ +G++SM+G++  + G+
Sbjct: 314 KILIIVEGIYSMEGSICNLPGI 335


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
 Frame = +3

Query: 111 KLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNHP-EV 287
           K+RDV E  +  +  A     +RV      T     G +   +N  + NYLG +      
Sbjct: 163 KVRDVFERPICSVPGATVDLVDRVSHDGNWT-YEYPGTRTNVINVGSYNYLGFAQSAGPC 221

Query: 288 VEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFES 467
            E +   + + G    +     G      +LE  +++F G ED I +   F  N+     
Sbjct: 222 AEQSASSIDREGLSCCTTVHERGRSVSQAKLEKLVAEFLGVEDAICFSMGFATNSMNAPC 281

Query: 468 MLTPEDAVFSDALNHASIIDGIRLCKAQKYRYPHRDLTELEHLL----------AHSEAR 617
           ++     + SD  NHAS+I G RL  A    + H D+  LE +L           H   +
Sbjct: 282 LVDKHSLIISDKYNHASLILGCRLSGASTKVFEHNDMESLERILRDAIAYGNPKTHRPYK 341

Query: 618 IKLIVTDGVFSMDGTVAPIKGL 683
             LI+ +G++SM+G++  + G+
Sbjct: 342 KILIIVEGIYSMEGSICNLPGI 363


>M98552-9|AAA28210.3|  569|Caenorhabditis elegans Hypothetical
           protein ZK370.8 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 519 IIDGIRLCKAQKYRYPHRDLTELEHLLAHSEARIKLIVTDGVFSMDGTVAPIKGLRDLA 695
           I+  ++LC ++ Y   HR + E+E L         L++   V+ M       K L + A
Sbjct: 400 IVTFLKLCTSEDYADVHRRIREMEELAESRSTHFNLVLMSKVYMMTNNEESSKKLLEEA 458


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 306 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 404
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 336 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 368


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 306 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 404
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 406 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 438


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 306 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 404
           G +KY  GL +     G QS+  E +NR   FH
Sbjct: 337 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 369


>Z83102-5|CAB05468.1|  179|Caenorhabditis elegans Hypothetical
           protein C54C8.6 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   IRRHGSALAATTQRTEWHSSSSFTRSEEARKSW 103
           I +HG ++   T ++ WHS ++  RS  + K W
Sbjct: 93  ITQHGISVQFFTSQSNWHSITNNNRSFSSYKLW 125


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 ERVLTSPQDTKVRVQGAQGEFLN-FCANNY 260
           +R + SP++ +  +  A+GEF+N FC  +Y
Sbjct: 859 DRAVLSPEEEQASMYNAEGEFVNPFCRLSY 888


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  KRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 218
           K ++R  V+K  DVL ++   + +      E +LT+P D K R Q
Sbjct: 423 KNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 466


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  KRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 218
           K ++R  V+K  DVL ++   + +      E +LT+P D K R Q
Sbjct: 757 KNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 800


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 36  LRNVLNG-TQVRHLHE-VKRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKV 209
           L+NV+N  T+ R ++E + +Q+   +  ++  LE  +   K+     +E VLTSP+  K 
Sbjct: 193 LKNVVNEYTETRQINEELDKQKEEAILHIQ-ALEKEMLTGKKTIEHLNEEVLTSPEQLKQ 251

Query: 210 RVQ 218
            ++
Sbjct: 252 EME 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,251
Number of Sequences: 27780
Number of extensions: 289443
Number of successful extensions: 887
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)