Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o05
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    29   0.64 
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   4.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   6.0  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 503 CSMQRLR*VRPLVPQTGSRSDVQRWSHLEPCAREHE 396
           CS    +  RP VP  G++ D + W H E C+  H+
Sbjct: 229 CSCHHDKFPRP-VPHNGTKPDHKPWKHEEHCSCHHD 263



 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 476 RPLVPQTGSRSDVQRWSHLEPCAREHEPWS 387
           RP VP  G++ D + W H E C+  H+ +S
Sbjct: 321 RP-VPHNGTKPDHKPWKHEEHCSCHHDKFS 349



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 476 RPLVPQTGSRSDVQRWSHLEPCAREHE 396
           RP VP  G++ D + W H E C+  H+
Sbjct: 209 RP-VPHNGTKPDHKPWKHEEHCSCHHD 234



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 503 CSMQRLR*VRPLVPQTGSRSDVQRWSHLEPC 411
           CS    +  RP VP  G++ D + W H E C
Sbjct: 173 CSCHHDKFPRP-VPHNGTKPDHKPWKHEEHC 202



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 503 CSMQRLR*VRPLVPQTGSRSDVQRWSHLEPC 411
           CS    +  RP VP  G++ D + W H E C
Sbjct: 258 CSCHHDKFPRP-VPHNGTKPDHKPWKHEEHC 287



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 503 CSMQRLR*VRPLVPQTGSRSDVQRWSHLEPC 411
           CS    +  RP VP  G++ D + W H E C
Sbjct: 341 CSCHHDKFSRP-VPHNGTKPDHKPWKHEEHC 370


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -2

Query: 74  IQELNQQAASKITTIALELEVNLD 3
           ++E+N+ A+ K+T++ LEL ++ D
Sbjct: 587 VREINRDASGKVTSLKLELHLDGD 610


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 78  ATCAAGSERGQQC 116
           ATCAA S RG+QC
Sbjct: 205 ATCAAWSRRGKQC 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,490
Number of Sequences: 5004
Number of extensions: 38189
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)