Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20o05
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              37   2e-04
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 424 CDHRCTSERDPVCGTNGRTYLNRCMLQVEICRLGIGLS 537
           C  +C     PVC +NG+ Y N C L    C  G  L+
Sbjct: 106 CMRKCPRRHRPVCASNGKIYANHCELHRAACHSGSSLT 143



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 265 CPRICGPALQGEPVCATDGYIYPSLCEMRKKTCGKGVRL 381
           C R C    +  PVCA++G IY + CE+ +  C  G  L
Sbjct: 106 CMRKC--PRRHRPVCASNGKIYANHCELHRAACHSGSSL 142



 Score = 28.3 bits (60), Expect = 0.074
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 616 PICGSDGNVYKSTCQMKLLTCGQG 687
           P+C S+G +Y + C++    C  G
Sbjct: 116 PVCASNGKIYANHCELHRAACHSG 139


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 431 WSHLEPCAREHEPWSGASRTPFPQVFFLIS 342
           W  L   A  H+ +      P+P +FF I+
Sbjct: 201 WDILGVPAERHKKYYPCCDEPYPDIFFNIT 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,117
Number of Sequences: 438
Number of extensions: 3210
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)