Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20n13
(742 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.0
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 4.0
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 22 5.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 7.0
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 22 7.0
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 9.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.2
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 9.2
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 3.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 706 SCMTFDLAVPRRTNFVKLNLISNYKPIVYMWSLNLYV 596
S +TF++ + R+T F +NLI I ++ L Y+
Sbjct: 237 SDITFNITMRRKTLFYTVNLIIPCVGITFLTVLVFYL 273
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 700 MTFDLAVPRRTNFVKLNLISNYKPIVYMWSLNLYV 596
+TF++ + R+T F +N+I I ++ L Y+
Sbjct: 234 ITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL 268
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 700 MTFDLAVPRRTNFVKLNLISNYKPIVYMWSLNLYV 596
+TF++ + R+T F +N+I I ++ L Y+
Sbjct: 234 ITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL 268
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 22.6 bits (46), Expect = 4.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 199 LESAESVIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQK--CFKE 363
L E+ ++ A E + + C +YF LL NP T+ + + CF +
Sbjct: 29 LLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFND 85
Score = 21.8 bits (44), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 91 YSIGTRTGSSIPIPFTETGSGISRVTLDRA 2
Y I R G + PF + + S LDRA
Sbjct: 499 YKIARREGIRLAAPFNASPTTWSPADLDRA 528
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 22.2 bits (45), Expect = 5.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 217 VIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQKCFKEF 366
++ N T + LA A E Y P+ + L WN P ++ V+ ++ F
Sbjct: 2 LLHNKTLAGKALAFIAE--EGYVPSMREKFLGWNVPPEYSDLVRPHWRAF 49
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 700 MTFDLAVPRRTNFVKLNLISNYKPIVYMWSLNLYV 596
+TF++ + R+T F +NLI I ++ L Y+
Sbjct: 230 ITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFYL 264
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.8 bits (44), Expect = 7.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 278 TTARHILMDCC 310
T RH++M CC
Sbjct: 2 TKGRHVVMSCC 12
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 7.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 217 VIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQKCFKEF 366
++ N T + LA A E Y P+ + L WN P ++ V ++ F
Sbjct: 2 LLHNKTLAGKALAFIAE--EGYVPSMREKFLGWNVPPEYSDLVHPHWRAF 49
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 9.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 634 KPIVYMWSLNLYVSCFLSIL 575
K I+YM L L +SC ++ L
Sbjct: 149 KTILYMVKLTLKLSCAMNFL 168
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 694 FDLAVPRRTNFVKLNLISNYKPIVYMWSLNLYV 596
F++ + R+T F +NLI I Y+ L Y+
Sbjct: 227 FNITLRRKTLFYTVNLIVPCVSISYLSVLAFYL 259
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 9.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 617 VVIKFVCIVFLKH 579
++ FVC VFLKH
Sbjct: 669 LITLFVCGVFLKH 681
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,165
Number of Sequences: 438
Number of extensions: 4205
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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