Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20n10
         (263 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 105 ATSALAQSPPPRSCTPAVITKS 40
           ATS+ + SP P S T A +  S
Sbjct: 834 ATSSTSTSPRPASSTAATLVLS 855


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 99  SALAQSPPPRSCTPA 55
           S +A SPPPR   P+
Sbjct: 388 SCVACSPPPRQTPPS 402


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 260 FFCFLINIILDIIKVCTNEWRVC 192
           FF     +++ I     N WR+C
Sbjct: 9   FFVLTTMLMMAIAVELPNNWRIC 31


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 132 FQTWQVTLL*RH*ELGL 182
           F  WQVTL  R  EL L
Sbjct: 905 FPVWQVTLNARLVELSL 921


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,391
Number of Sequences: 438
Number of extensions: 1129
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)