Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20n09
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    29   0.72 
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    28   1.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.7  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    25   8.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   8.9  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   8.9  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 618 YLAHSTNMSSCCFIESHTSLIFASFLLFISASLTFTVSSM 499
           Y  +STNM    F E+   LI   F LF+      T+ S+
Sbjct: 268 YTRYSTNMRDRLFTEAKIPLIICFFALFVVRFFAITIQSI 307


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 200 PSPCPRRWRNAGIWSWN 150
           PSP PR+WR      WN
Sbjct: 545 PSPVPRKWRQLRFQQWN 561


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 434 PTQANGLSVVSLLNAELLSRKVIDETVNVSDAEINNRKLAKIND 565
           P Q +G  V  L    L +R       +VSD E++  +LA++ND
Sbjct: 202 PEQQSGPDVAELNT--LPNRSKTSSQASVSDEELSRTELAELND 243


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 QAQPVPRPYPSIAPSAGTGRRASITVPRPVTDAKD 242
           + QP+P   PSI PS          +PRP+T + D
Sbjct: 403 EIQPIP---PSIDPSLYVFPNGDYQIPRPLTASAD 434


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
 Frame = +2

Query: 485 LSRKVID-ETVNVSDAEINNRKLAKINDVCDSIKQQLLILVEWAKYIPAFTEL-HL---- 646
           L+ ++ D ET+N  + EI  R+  K+N+V +  ++   +L+      PA TE+ HL    
Sbjct: 424 LTEEIQDLETLNQLNTEIEARQSEKLNEVQEETQRLSQLLISSQ---PALTEVKHLKLCL 480

Query: 647 -DDQVALLRAHA 679
            D Q  LL+ +A
Sbjct: 481 SDSQEELLQLNA 492


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 347 RKCFKAGMKKEAVQNE-RDRINCRRPSYEEPTQANGLSVVSLLNAELLSRKVIDETVNVS 523
           R+    G++ ++ +N  R  +  +    E    A   S++ L   +L  R  ID+ ++  
Sbjct: 606 RELANLGVELKSTENRYRQLLQEKEEELEIQKAAVDESLLQLSKLQL-DRNDIDQAMDTQ 664

Query: 524 DAEINNRKLAKINDVCDSI 580
             E+   +L K++D+ DS+
Sbjct: 665 IDELLKSQLEKLDDIVDSV 683


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 258 TLRLKNPLHPSQDEAP*CLPVALSPQM 178
           +L  + P  PS+DE P C    + PQ+
Sbjct: 33  SLSFQTPSTPSEDEMPQCFEDLIKPQV 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,199
Number of Sequences: 5004
Number of extensions: 61185
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)