Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20n02
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    88   7e-20
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.18 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.18 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   6.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 88.2 bits (209), Expect = 7e-20
 Identities = 56/190 (29%), Positives = 101/190 (53%), Gaps = 5/190 (2%)
 Frame = +3

Query: 96  NMFIAVYLFIIIVCIVYFEKCLRRNAKFPEL---SRRLPFIGHAHLFVGDSVHLWKIAQR 266
           ++F+++ +  +I+  +YF    R   +  E       LP IG+A    G    ++    +
Sbjct: 13  SVFLSLLIPALILYFIYFRISRRHLLELAEKIPGPPALPLIGNALDLFGSPDAMFS---Q 69

Query: 267 ISRESLQNGGLVTISFGPKKVYAVTDPEDINTV--ANLSMEKSYIYGFSRPWLGDGLFTA 440
           + +++     +V I  GPK V  + DP D+  +  +N+ ++KS  Y F +PWLGDGL  +
Sbjct: 70  VLKKAENFKDVVKIWVGPKLVICLIDPRDVEIILSSNVYIDKSTEYRFFKPWLGDGLLIS 129

Query: 441 DVLTWRNNRRLLNQAFKHTILDGFVDVFNNQARSLVDELAAEADLEKIYILNKLSLHSLR 620
               WRN+R+L+   F   +L  F+D+FN  ARS+V+++  E   E     N +S  ++ 
Sbjct: 130 TGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKE-FDCHNYMSELTVD 188

Query: 621 LVFKTILGVS 650
           ++ +T +GVS
Sbjct: 189 ILLETAMGVS 198


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 106 INMLRLQLFCG*QKYV*SYRH 44
           IN  R  LFCG QKY  S+ H
Sbjct: 229 INGRRASLFCGLQKYTRSFAH 249


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 106 INMLRLQLFCG*QKYV*SYRH 44
           IN  R  LFCG QKY  S+ H
Sbjct: 224 INGRRASLFCGLQKYTRSFAH 244


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 371 ISHGVDILWISHSI 330
           +SH  +++W+SH I
Sbjct: 113 VSHTGEVVWLSHGI 126


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 427 VCSLQMF*HGETTED 471
           VCSL+M  +G TT+D
Sbjct: 173 VCSLRMASYGWTTDD 187


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 427 VCSLQMF*HGETTED 471
           VCSL+M  +G TT+D
Sbjct: 173 VCSLRMASYGWTTDD 187



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 315 GPKKVYAVTDPEDINTVANLSMEKSYIYGFSRPWLGDGL 431
           GP  V        I T++++ ME S    F   WL + L
Sbjct: 57  GPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERL 95


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 53  GLYIFLSTTKKLKPQHVYSGILVH 124
           G  I +  T+KL P H ++ ++ H
Sbjct: 90  GSIITIPPTRKLPPLHPHTAMVTH 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,937
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)