Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m19
         (139 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978           42   5e-05
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582           42   5e-05
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...    42   5e-05
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...    42   5e-05
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    26   3.7  
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229...    25   8.5  

>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
          Length = 78

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 3  HRGMRHYWGLRVRGQH 50
          HRG+RHYWGLRVRGQH
Sbjct: 46 HRGLRHYWGLRVRGQH 61


>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   HRGMRHYWGLRVRGQH 50
           HRG+RHYWGLRVRGQH
Sbjct: 116 HRGLRHYWGLRVRGQH 131


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   HRGMRHYWGLRVRGQH 50
           HRG+RHYWGLRVRGQH
Sbjct: 136 HRGLRHYWGLRVRGQH 151


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   HRGMRHYWGLRVRGQH 50
           HRG+RHYWGLRVRGQH
Sbjct: 138 HRGLRHYWGLRVRGQH 153


>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 13  CDITGAFVCVVSTLRLLAGEEELLVY 90
           C+++  F+C +STL +     ELL++
Sbjct: 195 CNLSFFFICYLSTLLIFCNANELLLF 220


>11_04_0365 -
           16818468-16818514,16818619-16821706,16822860-16822919,
           16823595-16823954
          Length = 1184

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 56  DYWQERKNCW 85
           D W ERK+CW
Sbjct: 323 DVWNERKDCW 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,130
Number of Sequences: 37544
Number of extensions: 20572
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)