Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20m19
(139 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18 pro... 41 8e-04
BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18 p... 41 8e-04
BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18 p... 41 8e-04
BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18 p... 41 8e-04
AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18 ... 41 8e-04
AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18 p... 41 8e-04
AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18 ... 41 8e-04
AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18 ... 41 8e-04
AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18 ... 41 8e-04
AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18 p... 41 8e-04
AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18 p... 41 8e-04
BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein. 38 0.008
BC036667-1|AAH36667.1| 874|Homo sapiens coiled-coil domain cont... 27 8.1
AK093035-1|BAC04026.1| 809|Homo sapiens protein ( Homo sapiens ... 27 8.1
>X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 120 HRGLRHFWGLRVRGQH 135
>AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18
protein.
Length = 82
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 3 HRGMRHYWGLRVRGQH 50
HRG+RH+WGLRVRGQH
Sbjct: 50 HRGLRHFWGLRVRGQH 65
>BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein
protein.
Length = 74
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 6 RGMRHYWGLRVRGQH 50
RG+RH+WGLRVRGQH
Sbjct: 43 RGLRHFWGLRVRGQH 57
>BC036667-1|AAH36667.1| 874|Homo sapiens coiled-coil domain
containing 135 protein.
Length = 874
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 SQRDATLLGPSCAWSAH*DYWQERKNCW-CIKE 97
S +D LG W+ H +YW ++CW C K+
Sbjct: 329 STQDEHFLGIESLWN-HKNYWINMQDCWNCCKD 360
>AK093035-1|BAC04026.1| 809|Homo sapiens protein ( Homo sapiens
cDNA FLJ35716 fis, clone TESTI2000431. ).
Length = 809
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 SQRDATLLGPSCAWSAH*DYWQERKNCW-CIKE 97
S +D LG W+ H +YW ++CW C K+
Sbjct: 264 STQDEHFLGIESLWN-HKNYWINMQDCWNCCKD 295
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,502
Number of Sequences: 237096
Number of extensions: 124260
Number of successful extensions: 233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 76,859,062
effective HSP length: 26
effective length of database: 70,694,566
effective search space used: 1343196754
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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