Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m19
         (139 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   3.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   5.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          18   9.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    18   9.5  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +2

Query: 62  WQERKNCWCIKE 97
           WQ  ++C C +E
Sbjct: 69  WQMERSCMCCQE 80


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 19  ITGAFVCVVSTLRLLA 66
           + G  VC ++T  LLA
Sbjct: 558 LAGVLVCYLNTFLLLA 573


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  TGAFVCVVSTLRLLAGEEELLVYQRR 99
           TGA++C  S++  +  +   LV Q +
Sbjct: 469 TGAYMCQASSIGGITRDISSLVVQEQ 494


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 19  ITGAFVCVVSTLRLLA 66
           + G  VC ++T  LLA
Sbjct: 648 LAGVLVCYLNTFLLLA 663


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 55 RLLAGEEELLVY 90
          RL+ G+E+ +VY
Sbjct: 27 RLITGDEKWVVY 38


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 55  RLLAGEEELLVY 90
           RL+ G+E+ +VY
Sbjct: 148 RLITGDEKWVVY 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,243
Number of Sequences: 438
Number of extensions: 182
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)