Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20m18
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 185 5e-48
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 54 3e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.36
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.1
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.9
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.9
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 7.8
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 185 bits (451), Expect = 5e-48
Identities = 85/152 (55%), Positives = 115/152 (75%)
Frame = +2
Query: 239 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 418
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 419 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 598
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 599 LGPEKTSFFQALSIPTKISKGTIEIIXDVHIL 694
+ P KTSFFQAL IPTKI++GTIEI DVH++
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLV 159
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 53.6 bits (123), Expect = 3e-08
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +2
Query: 176 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 355
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 356 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 520
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 521 ENKVQAP-ARPGAIAPLSVVIPA 586
E+ VQ AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 369 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 476
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 675 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 550
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 435 RAGLLSRWSLMALRIIVFFPMSTILEPR 352
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 513 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 388
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 682 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 560
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 609 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 439
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 438 SRAGL 424
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 528 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 367
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 405 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 584
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 585 PTTPAS 602
+TP +
Sbjct: 577 SSTPVT 582
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 287 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 433
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 682 IVDDFNSTL*NLGRDRKSL 626
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,348
Number of Sequences: 5004
Number of extensions: 62314
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -