Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m15
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   4.7  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   8.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.2  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   8.2  

>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 356 SYENTIICFLNIYNNSNIRNL 294
           +Y++   CFL+IY NS I+ L
Sbjct: 226 NYKSFKDCFLSIYRNSGIKGL 246


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 369 EVMTFLREYNHLFFKHLQ*F 310
           E++  +REY+H + KH+  F
Sbjct: 87  EIVNLIREYSHKYHKHIPAF 106


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 289 DYRFRILELL*MFKKQMIVFS*ESHDFSSRHGQ-RNM 396
           D+  +I+ELL  + KQM +    S D  +R G+ RN+
Sbjct: 427 DHIAQIIELLVNYPKQMALSGKHSRDLFNRRGELRNI 463


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 PLDIASRNPPKSPLKR 199
           PL ++ R PPK PL++
Sbjct: 298 PLHVSPRKPPKPPLRK 313


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 160 VQRLCFIFAHLCTFTDIK-QLINHRYYAFKPE 68
           +Q++C +F H  T  D + Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,290
Number of Sequences: 5004
Number of extensions: 38653
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)