Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m10
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    31   0.21 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   4.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   6.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   8.1  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   8.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   8.1  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 709 CVLTCLARSMGRTSRSLT*ASILNTANSS 623
           C ++CL RS  R SRS + +S+LN  N S
Sbjct: 22  CDISCLGRSSWRMSRSFSGSSVLNEINLS 50


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 21  SRTDVLNRMCNMCTRDVTLEAPTPPKVSRTLERMKLKHNITTDPVNEEKQRE 176
           S   V+N   N+  + + L   T  K++RT+ ++K+   ++ +PV+    +E
Sbjct: 752 SSLKVVNLSSNILEK-IKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQE 802


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 257 ETTRVEGIRY-SDTDIAAVPRXXXXXXXXXVDEPARLS**RPRLEGAVRGGRG 412
           ++ R++G  Y + +DI +  +            P RL    PR  G  RGGRG
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 462 GRYRTQASSISELRGEWPRPPRTAPSSRG 376
           G   T  + IS L+ +   PP TAP S G
Sbjct: 52  GASNTSTNQISSLKVDVSSPPSTAPGSAG 80


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 90  PPKVSRTLERMKLKHNITTDPVNEEKQREVEYQPDLL 200
           PP  S ++ R    H+ T+   NE+   E +++PD++
Sbjct: 365 PP--SSSISRSSTIHSCTSSKRNEDSLSESDFEPDII 399


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 451 PVSSYTSPFRDTSSAACRPSCSLSTTRSTPA*ACWDSWRTSAHSALRNSRTPHGYS 618
           P SS TS  RD + +  +   S ST  ++      ++++T  H+AL +  + H Y+
Sbjct: 355 PASSTTSA-RDQTPSTPKDVGSPSTAETSAEEKQMETYKTPTHAALSDIISTHDYA 409


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 184 YSTSLCFSSLTGSVVILCFNFIRSKVRDTFGGVGASSVTSRVHILHILFNTS 29
           Y T    SS+T S +      IR+ V + FG VG   V S + + +   NTS
Sbjct: 24  YPTIPSDSSITTSSLS---KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTS 72


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 661 LT*ASILNTANSSASCIHEVFSNSVRHCVRRYARSP 554
           L+ +S+       +S ++E +SN   +C RRY   P
Sbjct: 399 LSKSSLATPRPKLSSLLYENYSNQCANCGRRYGNDP 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,171
Number of Sequences: 5004
Number of extensions: 50918
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)