Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m08
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 258 FPTLICLIAPYLPKISYISSADI 190
           F TL   +   LPK+SYI +++I
Sbjct: 274 FMTLASKVENSLPKVSYIKASEI 296


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +3

Query: 303 YLMQKM--PVTIYLVLMFVTGIW 365
           YL  +M  P+TI  +++FVTGI+
Sbjct: 34  YLSMRMVIPLTIIYMIIFVTGIF 56


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 252 TLICLIAPYLPKISYISSADIL*G 181
           TL+      LPKISY+ S D+  G
Sbjct: 265 TLMSSTNAALPKISYVKSIDVYLG 288


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 252 TLICLIAPYLPKISYISSADIL*G 181
           TL+      LPKISY+ S D+  G
Sbjct: 265 TLMSSTNAALPKISYVKSIDVYLG 288


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 252 TLICLIAPYLPKISYISSADIL*G 181
           TL+      LPKISY+ S D+  G
Sbjct: 204 TLMSSTNAALPKISYVKSIDVYLG 227


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 318 MPVTIYLVLMFVTGIWLYSTIDPTKPLKVLILIRNKKKLIH*KRNMEYLVKICVNDKL*N 497
           +P+T+   ++FVTG  L   +        +++ RNK   +H   N  YL  + V+D L  
Sbjct: 54  LPITVIYAVIFVTG--LVGNVS-----TCVVIARNKS--MHTATNY-YLFSLAVSDLLLL 103

Query: 498 IS 503
           IS
Sbjct: 104 IS 105


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 318 MPVTIYLVLMFVTG 359
           +P+T+  V++FVTG
Sbjct: 34  VPITLTYVVIFVTG 47


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 311 AKNACDHLSGFNVCNRYLVVLYYRSN 388
           + N   ++S +N  N Y   LYY  N
Sbjct: 86  SNNYISNISNYNNNNNYNKKLYYNIN 111


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 311 AKNACDHLSGFNVCNRYLVVLYYRSN 388
           + N   ++S +N  N Y   LYY  N
Sbjct: 86  SNNYISNISNYNNDNNYNKKLYYNIN 111


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 311 AKNACDHLSGFNVCNRYLVVLYYRSN 388
           + N   ++S +N  N Y   LYY  N
Sbjct: 324 SNNYISNISNYNNNNNYNKKLYYNIN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,763
Number of Sequences: 438
Number of extensions: 3216
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)