Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m02
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.2  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.9  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 213 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 392
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 393 GIK 401
            ++
Sbjct: 552 PLR 554


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 270 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 449
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 450 -TQGLDDLAQRCAQYKKDGCHFAKW 521
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 99  PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 263
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 587 NIGVFLDSLVRGGVAANLQHAT 522
           NI +FL SL  GGVA NL  A+
Sbjct: 861 NITIFLVSLKAGGVALNLTEAS 882


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 641 LDNWHDALALTDGGVAGENIGVFLDSLVRGGV 546
           L NW +   L + G+   N+G F  S+VRG +
Sbjct: 585 LGNWTNIEYLPNSGINPSNVGTF--SMVRGAI 614


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 369 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 476
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 475 WARSSRPWVVHSSSDP-NSGTTPLSTLMPGMMPFFSSRETRGVPSS 341
           ++ S+ P   +S S P +S + P ++ +P    FFS   +   PSS
Sbjct: 87  FSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSS 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,178
Number of Sequences: 5004
Number of extensions: 62287
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)