Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20m01
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-5|CAA98116.1|  123|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AF106590-2|AAC78237.2|  301|Caenorhabditis elegans Hypothetical ...    32   0.31 
AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF273807-1|AAG15156.1|  416|Caenorhabditis elegans nuclear recep...    28   3.8  
AF016675-1|AAF02172.2|  416|Caenorhabditis elegans Nuclear hormo...    28   3.8  
AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical...    28   5.0  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF016685-2|AAG24148.1|  404|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z68218-3|CAA92473.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    27   8.7  
AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormo...    27   8.7  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   8.7  
AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin ...    27   8.7  

>Z73906-5|CAA98116.1|  123|Caenorhabditis elegans Hypothetical
           protein D2030.4 protein.
          Length = 123

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = +2

Query: 170 DDNPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAHYLLDYQVCRYKEMPLL- 346
           D  PTFDPQ GF+  RK REM A  E++   ++    RDYCAH+L+    C+ +  P   
Sbjct: 22  DRPPTFDPQYGFERPRKVREMKATWEEMEQWKLKPAQRDYCAHHLISLMKCQTQNAPFAG 81

Query: 347 YRCAHEKHNYLNCEQQDYVLRMK 415
           + C  E+  +  CE  D+++R+K
Sbjct: 82  HACDGERGAWDKCEYDDHIMRIK 104


>AF106590-2|AAC78237.2|  301|Caenorhabditis elegans Hypothetical
           protein F08B6.3 protein.
          Length = 301

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 83  LSGDNLILYITTMGQIMGGYHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEE 247
           L+GD L  ++   G   G Y A S+  NSDD+   D Q  ++   K   + AK E
Sbjct: 232 LAGDELTDWLLVDGTTAGSYEAESLLTNSDDDK--DGQLSYEEIVKHHALFAKTE 284


>AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical
           protein T27B7.3 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 118 HGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRND 234
           HG ++G I+C  CG  FRR S+   S WI   KK  + D
Sbjct: 16  HGTHFGVITCRACGVFFRR-SF--KSKWIF--KKCKKED 49


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +2

Query: 230 MIAKEEDLI-----SARIPNKYRDYCAHYLLDYQ---VCRYKEMPLLYRCAHEKHNYLNC 385
           +IAK++ +I     S +  ++  DY   Y+ D     + R KEM  L R A  KH+Y  C
Sbjct: 342 VIAKDQKMICPVDESGKYTSEVPDYQGVYVKDADKLIIKRLKEMGNLVRQAEVKHSYPFC 401

Query: 386 EQQDYVLRMK 415
            + D  L  K
Sbjct: 402 WRSDTPLLYK 411


>AF273807-1|AAG15156.1|  416|Caenorhabditis elegans nuclear receptor
           NHR-59 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 118 HGANYGRISCSLCGPEFRR 174
           HGA++G I+C  C   FRR
Sbjct: 28  HGAHFGAITCRACAAFFRR 46


>AF016675-1|AAF02172.2|  416|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 59 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 118 HGANYGRISCSLCGPEFRR 174
           HGA++G I+C  C   FRR
Sbjct: 28  HGAHFGAITCRACAAFFRR 46


>AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical
           protein T27B7.2 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 HGANYGRISCSLCGPEFRR*SYF*PSSWIS 207
           HG ++G ++C  C   FRR S    S WI+
Sbjct: 52  HGTHFGAVTCRACAAFFRRSS---KSKWIN 78


>AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical
           protein F44E7.8 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 109 HYHHGANYGRISCSLCGPEFRR 174
           H  HG ++G +SC  C   FRR
Sbjct: 31  HTAHGVHFGVLSCRACAAFFRR 52


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 185 FDPQAGFQYERKQREMIAKEEDLISARIPNKYRDYCAH--YLLDYQVCRYK 331
           F P      ERK+ EM+   EDL+   +P    +Y  H  Y L+  + +++
Sbjct: 804 FLPPFAANSERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALEKDLLKFE 854


>AF016685-2|AAG24148.1|  404|Caenorhabditis elegans Hypothetical
           protein F59E11.10 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 HGANYGRISCSLCGPEFRR 174
           HG +YG +SC  C   FRR
Sbjct: 29  HGNHYGVVSCRACAAFFRR 47


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
            K04B12.1 protein.
          Length = 1764

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 176  NPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYR 283
            NPT  P  G +Y + ++ +I +  +L  A  PN ++
Sbjct: 1013 NPTLSPFKGVRYHQGEQSLILEGHNLNLAAEPNDFK 1048


>Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical
           protein T22C1.7 protein.
          Length = 747

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 140 YHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEEDLISARIPN 274
           YH   +  ++ ++  F PQ G+     Q +     +DL+   IPN
Sbjct: 480 YHNHVMPNSNTNHVNFMPQYGYSDPNSQLQTPINSQDLLQPHIPN 524


>Z68218-3|CAA92473.1|  325|Caenorhabditis elegans Hypothetical
           protein K01H12.3 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 121 GANYGRISCSLCGPEFRR 174
           G ++G ISC+ CG  FRR
Sbjct: 12  GYHFGAISCAACGAFFRR 29


>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 HYHHGANYGRISCSLCGPEFRR*SYF*PSSWISIRKKTTRN 231
           H  HG ++G  SC  C   FRR +    S W S +K  T+N
Sbjct: 57  HGAHGNHFGATSCRACAAFFRRAA---NSKW-SFQKCQTQN 93


>AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 130 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 HGANYGRISCSLCGPEFRR 174
           HG ++G ISC  C   FRR
Sbjct: 45  HGNHFGAISCRACAAFFRR 63


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 176  NPTFDPQAGFQYERKQREMIAKEEDLISARIPNKYR 283
            NPT  P  G +Y + ++ +I +  +L  A  PN ++
Sbjct: 1015 NPTLSPFKGVRYHQGEQSLILEGHNLNLAAEPNDFK 1050


>AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin
           protein.
          Length = 747

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 140 YHARSVDLNSDDNPTFDPQAGFQYERKQREMIAKEEDLISARIPN 274
           YH   +  ++ ++  F PQ G+     Q +     +DL+   IPN
Sbjct: 480 YHNHVMPNSNTNHVNFMPQYGYSDPNSQLQTPINSQDLLQPHIPN 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,470,198
Number of Sequences: 27780
Number of extensions: 200142
Number of successful extensions: 716
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)