Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l24
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    52   1e-07
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.1  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   3.4  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    27   3.4  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.4  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +2

Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
           +S   I  H+ +Y KP LQ+ ++RIL M+ IY+  + + +   +     +  RE YEA+ 
Sbjct: 19  LSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSVYNEKIGSIFEPFREIYEAFA 78

Query: 650 IYNFMKYLLNYL 685
           +Y F   L++YL
Sbjct: 79  LYCFFCLLIDYL 90


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 129 PYTIIATIWVKNKTKTRIKITYNIAFVDSLDYVVGAICNLFSSHRKLMELCV-QTQ 293
           PY ++     +N     +K   NI  +D    ++ AIC++ SS     ++C+ +TQ
Sbjct: 337 PYPLLLQESARNALNLTLKD--NICIIDEAHNLIDAICSMHSSSISFRQVCIAETQ 390


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 KNKTKTRIKITYNIAFVDSLDYVVGAICNLFSSHRKLMELC 281
           K KTKTR K T+ IA       +   + N   +  K+ E C
Sbjct: 345 KTKTKTRAKSTWKIANKSVYSNLAPTLKNTIHAQIKIPEFC 385


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = +2

Query: 509 TKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYLN 688
           T P+  +H+ +++    +     L+ ++     +  +    C  ++ +YN   YL+ YL+
Sbjct: 287 TDPNFDEHVAKLINAQGV----ELVAIKSDPSELSPELKENC--SFQLYNLFPYLIRYLS 340

Query: 689 DGHD 700
           D +D
Sbjct: 341 DDYD 344


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 497 IVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLR 628
           ++HY +P L   I   +++V I A+N L    F E   +L +++
Sbjct: 149 VIHYWRPDLNVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVK 192


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 367 GASAYINSTFYKQWVQEIRSRST 435
           G SA + +TF  +W QE+ S ST
Sbjct: 318 GTSATLFNTFLLEWSQEVTSNST 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,607
Number of Sequences: 5004
Number of extensions: 53850
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)