Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l24
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470... 76 2e-14
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 73 2e-13
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 61 7e-10
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 60 2e-09
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 58 5e-09
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 56 2e-08
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 56 4e-08
07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807... 44 9e-05
>03_06_0530 -
34545699-34546013,34546121-34546354,34547006-34547078,
34548226-34548299,34548852-34549004
Length = 282
Score = 76.2 bits (179), Expect = 2e-14
Identities = 30/72 (41%), Positives = 52/72 (72%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
I++ I +H++HY +P Q+ I+R+++MVP+YA+ + + L P+ SIY +S+RE Y+A+V
Sbjct: 22 IALVHIYRHLLHYAEPIYQRFIVRLIFMVPVYAVMSFLSLILPDNSIYFNSIREIYDAWV 81
Query: 650 IYNFMKYLLNYL 685
IYNF L ++
Sbjct: 82 IYNFFSLCLAWV 93
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/69 (46%), Positives = 46/69 (66%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
+S+W I QH+ Y+ P QK II +L+MVP+YA ++I L E S+ D LR CYEA+
Sbjct: 35 VSLWLILQHLRSYSNPEEQKWIIAVLFMVPVYASESIISLWHSEFSLACDILRNCYEAFA 94
Query: 650 IYNFMKYLL 676
+Y F +YL+
Sbjct: 95 LYAFGRYLV 103
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 61.3 bits (142), Expect = 7e-10
Identities = 25/68 (36%), Positives = 43/68 (63%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
+S++ I QH+ Y P QK ++ ++ MVP YA+ + + L P+ S+Y LR+ YEA+
Sbjct: 35 LSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVNPDTSVYCGILRDAYEAFA 94
Query: 650 IYNFMKYL 673
+Y F +Y+
Sbjct: 95 MYCFGRYI 102
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Frame = +2
Query: 485 ITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQS----IYLDSLRECYEAYVI 652
++QH+ ++ P QK I+ I+ M P+YA+N+ +GL + S +LD+++ECYEA I
Sbjct: 39 VSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAI 98
Query: 653 YNFMKYLLNYLN 688
FM + +YLN
Sbjct: 99 AKFMALMYSYLN 110
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
+SI+ I +H+ Y P QK ++ ++ MVP YA+ + + L P S+Y LR+ YEA+
Sbjct: 35 LSIYLIFEHLSAYNNPEEQKFVLGVILMVPCYAIESYVSLINPNTSVYCGILRDGYEAFA 94
Query: 650 IYNFMKY 670
+Y F +Y
Sbjct: 95 MYCFGRY 101
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/69 (33%), Positives = 43/69 (62%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
+S++ I +H+ Y +P QK +I ++ MVP+YA+ + L + + +R+CYEA+
Sbjct: 24 LSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLLNSNVAFICELMRDCYEAFA 83
Query: 650 IYNFMKYLL 676
+Y F +YL+
Sbjct: 84 MYCFERYLI 92
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAYV 649
+S++ + H+ Y P QK ++ ++ MVP YA+ + I L P S+ ++ LR+ YEA+
Sbjct: 34 LSLFLLFNHLSAYKNPEEQKFLVGVILMVPCYAVESYISLVNPSISVDIEILRDGYEAFA 93
Query: 650 IYNFMKYLLNYLNDGHD 700
+Y F +YL+ L G D
Sbjct: 94 MYCFGRYLVACLG-GED 109
>07_01_0961 +
8070992-8071015,8071016-8071089,8073051-8073200,
8073307-8073592,8074077-8074220,8074357-8074665
Length = 328
Score = 44.4 bits (100), Expect = 9e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 551 MVPIYALNALIGLEFPEQSIYLDSLRECYEAYVIYNFMKYLLNYL 685
+V +YA+ + + L P +IY +S+RE Y+A+VIYNF L ++
Sbjct: 6 IVQVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFSLCLAWV 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,537
Number of Sequences: 37544
Number of extensions: 291328
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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