Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l24
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical pr... 69 3e-12
Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical pr... 69 3e-12
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 31 0.80
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 31 0.80
AF038608-2|AAU05595.1| 297|Caenorhabditis elegans Serpentine re... 30 1.8
AC103567-5|AAL35728.2| 337|Caenorhabditis elegans Hypothetical ... 30 1.8
U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 28 5.6
>Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/74 (43%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYL--DSLRECYEA 643
I+ QI QH+ Y+ P+ Q+ I+RIL++VPIYA ++ + L F ++Y+ +S+R+CYEA
Sbjct: 31 ITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSLIFFSDNVYIYFNSIRDCYEA 90
Query: 644 YVIYNFMKYLLNYL 685
+VIY+F+ YL
Sbjct: 91 FVIYSFLSLCYEYL 104
>Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/74 (43%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +2
Query: 470 ISIWQITQHIVHYTKPSLQKHIIRILWMVPIYALNALIGLEFPEQSIYL--DSLRECYEA 643
I+ QI QH+ Y+ P+ Q+ I+RIL++VPIYA ++ + L F ++Y+ +S+R+CYEA
Sbjct: 31 ITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSLIFFSDNVYIYFNSIRDCYEA 90
Query: 644 YVIYNFMKYLLNYL 685
+VIY+F+ YL
Sbjct: 91 FVIYSFLSLCYEYL 104
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 135 TIIATIWVKNKTKTRIKIT--YNIAFVDSLDYVVGAICNLFSSHRKLMELCVQTQ 293
TI+ + K KT + I YNI F D + Y++G I + +S LME+ V T+
Sbjct: 859 TILERLEGPQKEKTTVDIIKYYNIEFRDRIKYIIGQIDS--ASDEDLMEMPVATE 911
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 135 TIIATIWVKNKTKTRIKIT--YNIAFVDSLDYVVGAICNLFSSHRKLMELCVQTQ 293
TI+ + K KT + I YNI F D + Y++G I + +S LME+ V T+
Sbjct: 859 TILERLEGPQKEKTTVDIIKYYNIEFRDRIKYIIGQIDS--ASDEDLMEMPVATE 911
>AF038608-2|AAU05595.1| 297|Caenorhabditis elegans Serpentine
receptor, class z protein70 protein.
Length = 297
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 38 TLYCVVNKCTFVIILFKLYYILN*LLIFVLTIYHYRYNL 154
TLY + T +++FKL YIL +IF+L + + L
Sbjct: 213 TLYTYIFWLTITVVVFKLIYILLFTIIFILFLPQFSIQL 251
>AC103567-5|AAL35728.2| 337|Caenorhabditis elegans Hypothetical
protein Y51F10.10 protein.
Length = 337
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 405 LFIECTINIGTSTTIRMTYRAMN--TGLIHNLH*LKNEITAFEHIIPLAYDEKKINYK*H 232
+ + C +N S T T +++ + ++H+LH ++ F+ I LA D++K +
Sbjct: 109 VLVPCPVNSNPSMTSSSTKPSVSNTSAMVHSLHEFESTNNVFDDIQILALDDRKALQEVL 168
Query: 231 QLHNPTNQRM 202
L N +N ++
Sbjct: 169 MLTNGSNTQL 178
>U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical
protein T16A1.2 protein.
Length = 786
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 521 LQKHIIRILWMVPIYALNALIGLEFPEQSIYLDSLRECYEAY 646
L+ +IR W IY++N + +EF E + L L + Y
Sbjct: 661 LENRLIRATWWDDIYSVNKTVKVEFEEAAFALSKLDLKFSVY 702
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 366 TIRMTYRAMNTGLIHNLH*LKNEITAFEHIIPLAYD-EKKINYK*HQL 226
T R T+R +N H++ +K I + H IP+ + +++ Y H+L
Sbjct: 864 TSRKTHRLVNRRNSHSIDEIKISINSLHHTIPIVFQGDRQSLYDVHEL 911
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 366 TIRMTYRAMNTGLIHNLH*LKNEITAFEHIIPLAYD-EKKINYK*HQL 226
T R T+R +N H++ +K I + H IP+ + +++ Y H+L
Sbjct: 864 TSRKTHRLVNRRNSHSIDEIKISINSLHHTIPIVFQGDRQSLYDVHEL 911
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,397
Number of Sequences: 27780
Number of extensions: 296302
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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