Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l22
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 25 2.7
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 3.6
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 4.8
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 25 4.8
SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ... 25 4.8
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.8
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 25 4.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 24 6.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 24 8.3
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 24 8.3
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 2.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 88 IHYLFTKNIYENFFNKPKVFISN 20
+HY ++++ E F KP F+SN
Sbjct: 148 VHYPNSESLIERFVEKPVEFVSN 170
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 3.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 181 LVRRRNIFRCVNLRLDIKRRSFLLIYNDCLIIFVVLEFRMMQL 309
LV R + + VN+ ++K + IYND +I L R++ L
Sbjct: 788 LVTARKLLQLVNMEFNLKGPFPVGIYNDLIIKLENLGIRLVVL 830
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 299 ILNSRTTKIIRQSL*MSKKLLRFISNL-KFTHRKILRRLTRPTHN 168
+LNS++ I+ +S + K++L +SNL + TH + + +N
Sbjct: 253 LLNSKSKNIVNKSSSILKRILGVLSNLNEKTHHFFISCFKKQPYN 297
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 256 K*AKNSYVLYLISNLHIEKYCVASPGLHTTEEFRKEI 146
K KN+Y+L L +L EK + S ++T E R+ +
Sbjct: 221 KQVKNAYILILNVSLEYEKSEINSGFFYSTSEQRERL 257
>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 120
Score = 24.6 bits (51), Expect = 4.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 258 INEQKTPTFYI*SQIYTSKNIASPHQAYTQRRNFERKSILINNIS 124
+NE F+I +Q T + IA YT +R + +LIN +
Sbjct: 32 VNENGDKNFFIITQKTTDEQIAEAFDDYTTKRK-DIAIVLINQFA 75
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 4.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 184 PGLHTTEEFRKEIDSNK*YFLLTYIDTLLTSPIHYLFTKNIYENFFNKPKV 32
PG+HT EE EI N + S H FTK YE +N+ K+
Sbjct: 10 PGVHTVEEIEAEIHKNLHISKSCSYQKVPNS--HKEFTKFCYE-VYNEIKI 57
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 4.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 199 YCVASPGLHTTEEFRKEIDSNK*YFLLTYIDTLLTSPIHYLFTKNIYENFFNK 41
+C+A T + ++E+ S YF+ I+ T PI T+N E+FF K
Sbjct: 18 WCIAVDK-STNVKNKEELLSTLTYFINYEIEMGQTYPIDIKMTRNEAEDFFFK 69
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 289 EFRMMQLKTNFCIIYSINVNK 351
E+R QLK NF ++ S NK
Sbjct: 600 EYRPKQLKFNFALVLSPEANK 620
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 112 IDTLLTSPIHYLFTKNIYENFFNKPKVFISNSRFLIR 2
I+TLL +P +++ + + F SN +FL+R
Sbjct: 365 INTLLKAPGQWIYAVTQVTDALGNSQQFPSNDQFLLR 401
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 96 HRQFIIYLPKIFMRIFLINLKFSYQI 19
H+QF LPK + L++ F+Y +
Sbjct: 16 HKQFNNELPKFMQSVGLLDAGFNYHV 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,522
Number of Sequences: 5004
Number of extensions: 27893
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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