Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l22
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509...    32   0.16 
11_06_0545 + 24839536-24843421,24843871-24844310                       29   0.85 
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    29   0.85 
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498...    27   6.0  
06_01_0317 + 2281564-2283855                                           26   7.9  
03_02_0731 - 10786122-10787018,10787859-10788449,10788659-107887...    26   7.9  

>01_06_0667 -
           31048987-31049134,31049630-31049865,31050720-31050926,
           31051005-31051197,31051282-31051652
          Length = 384

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 87  IGDVNKVSI*VNKKYYLLESISFRNSSVVCRPG 185
           +G  +  S  VN +Y+L  +I+F+N+S V +PG
Sbjct: 165 LGTYSSASFAVNAQYFLARNITFKNTSPVPKPG 197


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 172 TTEEFRKEIDSNK*---YFLLTYIDTLLTSPIHYL 77
           TTE F  E+ SNK     FLL Y   L   P+HYL
Sbjct: 220 TTESFLTELMSNKADATAFLLEYTKELFGGPLHYL 254


>01_07_0290 -
           42542201-42542359,42542443-42542551,42542729-42543516,
           42543601-42543744,42543840-42544013,42544056-42544369,
           42544467-42544636,42544916-42545043,42545125-42545185,
           42545473-42545642,42545783-42547387,42547479-42547631,
           42547747-42547905,42548066-42548236,42548357-42548404,
           42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 157 EIPPLCVGLVRRRNIFRCVNLRLDIKR 237
           E+PPLCV  V++ N  R + LR  IK+
Sbjct: 137 ELPPLCVAEVKKSNGARGLELRAPIKK 163


>05_06_0120 +
           25748882-25749297,25749411-25749600,25749682-25749888,
           25750234-25750401,25751155-25751390,25751617-25751764
          Length = 454

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +3

Query: 117 VNKKYYLLESISFRNSSVVCRPG 185
           VN ++++ ++I+F+N++ V RPG
Sbjct: 189 VNAQFFVAKNITFKNTAPVPRPG 211


>06_01_0317 + 2281564-2283855
          Length = 763

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = -3

Query: 317 LVFSCIILNSRTTKIIRQSL*MSKKLLRFISNLKFTHRKILRRLTRPTHNGGISKGNRF* 138
           + +SC++    T  +I ++L   KK+L  +SN++ +   +   ++  ++   +  G +F 
Sbjct: 486 VTWSCLVAGLATNGLIHEALQFYKKML--LSNIRPSESVVSSLISCLSNYSMMVHGQQFH 543

Query: 137 *IIFLINLY*HLINIANSL-SIYQK 66
                I L  HL+ I NSL S+Y K
Sbjct: 544 ATTIKIGLDSHLL-IQNSLISLYCK 567


>03_02_0731 -
           10786122-10787018,10787859-10788449,10788659-10788740,
           10789914-10790107
          Length = 587

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 199 IFRCVNLRLDIKRRSFLLIYNDCLIIFVVLEF 294
           +  CVN+RL+    +FLL ++   ++ V  EF
Sbjct: 116 VVNCVNIRLNAPTVAFLLEHSSAEVVMVDQEF 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,429,331
Number of Sequences: 37544
Number of extensions: 128506
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)