Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l22
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.28 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   0.84 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 FLLTYIDTLLTSPIHYLFTKNIYENFFNKPKV--FISNSRFLI 5
           F  T  D +L       F K+IYE + N+P V  + + S FL+
Sbjct: 42  FFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLL 84


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 136 Y*NRFPFEIPPLCVGLVRRRNIFRCVNLRLDIKRRSFLLI 255
           Y   FP E       ++RR+ +F  VNL L     SFL +
Sbjct: 213 YKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCV 252


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 226 DIKRRSFLLIYN 261
           D+KRR+  LIYN
Sbjct: 748 DMKRRNGALIYN 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,375
Number of Sequences: 438
Number of extensions: 1927
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)