Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l16
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.46 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.46 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 328 LALQRHATRTHRFFVTLTITQLQLCVGFNPFNPVDTSRFILLALCKYVVH 179
           + L+RH +     +VTLTI  + + +      P  T R I+  L  +++H
Sbjct: 237 ILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANL-NFILH 285


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 452 PCAAIAPVQGFLLKILLSETPGHSFQDLTSEKCNSLLVRAVCTILSQCLAPKYNV 616
           P AAI  V G +  I+      + F+    + CN +    VC IL   L P + V
Sbjct: 332 PLAAI--VLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILGSILVPFFYV 384


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 459 LRSPQYKDFCLR-FSYQRLQDIVFKT*HRRSATLYL*ELCVR 581
           +  PQ   +C R FS        F+  H +S TLY+ E C R
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNR 43


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 317 APRYSHSSFLCYTYYNSTTAVCRFQSFQPRRHIEIYTS 204
           A +Y      C    NST AVC      PRRH  +  S
Sbjct: 83  ASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCAS 120


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 545 KCNSLLVRAVCTI--LSQCLAPKYNVAVYRK 631
           KC    ++   T+    +C+ P+Y  AV RK
Sbjct: 35  KCQECRLKKCLTVGMRPECMVPEYQCAVKRK 65


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 300 VRVAWRWSASWQARDACCGGTTSKKMF 380
           + + W  + SW+A D  C      +MF
Sbjct: 94  LEIGWAITVSWKAGDVMCRIMAFFRMF 120


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 545 KCNSLLVRAVCTI--LSQCLAPKYNVAVYRK 631
           KC    ++   T+    +C+ P+Y  AV RK
Sbjct: 238 KCQECRLKKCLTVGMRPECVVPEYQCAVKRK 268


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 466 DRSARSTLLLNEGAGFIRTELKTL 395
           D   R T  LN+   F+R  L  L
Sbjct: 23  DTCGRDTYALNQSLHFVRASLSNL 46


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 466 DRSARSTLLLNEGAGFIRTELKTL 395
           D   R T  LN+   F+R  L  L
Sbjct: 113 DTCGRDTYALNQSLHFVRASLSNL 136


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 43  GCHFCKLW 20
           G H CKLW
Sbjct: 105 GIHLCKLW 112


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 43  GCHFCKLW 20
           G H CKLW
Sbjct: 105 GIHLCKLW 112


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 599 LDTGLKSYTQLSQVKSCTSPMLSLENYVLESL 504
           +D G +S T+LSQ +     +    NYV  S+
Sbjct: 219 IDEGKESKTKLSQWRKDGGTVKKKVNYVYRSV 250


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 43  GCHFCKLW 20
           G H CKLW
Sbjct: 105 GIHLCKLW 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,713
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)