Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l15
(560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 130 2e-30
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 130 2e-30
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 130 2e-30
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 130 2e-30
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 130 2e-30
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 130 2e-30
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 130 2e-30
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 130 2e-30
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 130 2e-30
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 104 2e-22
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 59 1e-08
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 59 1e-08
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 59 1e-08
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 47 5e-05
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 47 5e-05
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 47 5e-05
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 46 7e-05
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 46 7e-05
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 46 7e-05
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 46 7e-05
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 45 2e-04
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 45 2e-04
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 45 2e-04
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 45 2e-04
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 44 4e-04
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 42 0.001
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 42 0.001
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 42 0.001
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 42 0.001
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 42 0.001
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 42 0.001
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 42 0.001
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 42 0.002
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 40 0.008
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 40 0.008
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 40 0.008
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 33 0.52
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 33 0.52
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 33 0.52
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 33 0.52
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 33 0.52
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 33 0.52
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 31 2.8
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 30 6.4
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 30 6.4
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 30 6.4
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 30 6.4
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 30 6.4
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 30 6.4
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 30 6.4
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 30 6.4
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 30 6.4
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 30 6.4
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 30 6.4
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 29 8.5
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 29 8.5
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 29 8.5
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 29 8.5
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 29 8.5
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 29 8.5
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 29 8.5
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 29 8.5
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 29 8.5
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 29 8.5
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 29 8.5
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 130 bits (315), Expect = 2e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 104 bits (250), Expect = 2e-22
Identities = 48/64 (75%), Positives = 56/64 (87%)
Frame = +1
Query: 136 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLES 315
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMVVIRGNSIIMLE+
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 60
Query: 316 LDRL 327
L+R+
Sbjct: 61 LERV 64
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 58.8 bits (136), Expect = 1e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 276
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 277 VVIRGNSIIML 309
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 58.8 bits (136), Expect = 1e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 276
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 277 VVIRGNSIIML 309
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 58.8 bits (136), Expect = 1e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 276
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 277 VVIRGNSIIML 309
VV RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 46.8 bits (106), Expect = 5e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 136 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 306
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 307 LESLD 321
L +D
Sbjct: 74 LGEID 78
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 46.8 bits (106), Expect = 5e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 136 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 306
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 307 LESLD 321
L +D
Sbjct: 74 LGEID 78
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 46.8 bits (106), Expect = 5e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 136 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 306
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 307 LESLD 321
L +D
Sbjct: 74 LGEID 78
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 46.4 bits (105), Expect = 7e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +1
Query: 94 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 267
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 268 VGMVVIRGNSIIMLESLDR 324
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 46.4 bits (105), Expect = 7e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +1
Query: 94 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 267
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 268 VGMVVIRGNSIIMLESLDR 324
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 46.4 bits (105), Expect = 7e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +1
Query: 94 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 267
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 268 VGMVVIRGNSIIMLESLDR 324
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 46.4 bits (105), Expect = 7e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +1
Query: 94 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNN 267
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNK 59
Query: 268 VGMVVIRGNSIIMLESLDR 324
G IRGN+++ + + R
Sbjct: 60 YGDAFIRGNNVLYISTQKR 78
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 291
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 292 NSIIMLESLD 321
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 291
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 292 NSIIMLESLD 321
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 291
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 292 NSIIMLESLD 321
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 291
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 292 NSIIMLESLD 321
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 44.0 bits (99), Expect = 4e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +1
Query: 169 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNSIIML 309
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 318
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 41.5 bits (93), Expect = 0.002
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 291
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 292 NSI 300
+++
Sbjct: 65 DNV 67
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 39.5 bits (88), Expect = 0.008
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +1
Query: 103 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 270
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 271 GMVVIRGNSIIML 309
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 39.5 bits (88), Expect = 0.008
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +1
Query: 103 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 270
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 271 GMVVIRGNSIIML 309
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 39.5 bits (88), Expect = 0.008
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +1
Query: 103 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 270
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E +G+R +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 271 GMVVIRGNSIIML 309
+++ GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 33.5 bits (73), Expect = 0.52
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 298 IIMLESLD 321
++ + ++
Sbjct: 69 VLYIRGVE 76
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 33.5 bits (73), Expect = 0.52
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 298 IIMLESLD 321
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 33.5 bits (73), Expect = 0.52
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 298 IIMLESLD 321
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 33.5 bits (73), Expect = 0.52
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 298 IIMLESLD 321
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 33.5 bits (73), Expect = 0.52
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 298 IIMLESLD 321
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 33.5 bits (73), Expect = 0.52
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 298 IIMLESLD 321
++ + ++
Sbjct: 69 VLYIRGVE 76
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 31.1 bits (67), Expect = 2.8
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SVEECK 249
M+ ++ + +D ++ L GR G + FD MNL+L DE + E+ +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 250 DGQRNNVGMVVIRGNSIIML 309
++ +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.9 bits (64), Expect = 6.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 29.5 bits (63), Expect = 8.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQRNN---V 270
++ + +D ++ L GR G + FD MNL+L DE + K +R +
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 271 GMVVIRGNSIIML 309
G+V++RG +++ +
Sbjct: 61 GLVLLRGENLVSM 73
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 29.5 bits (63), Expect = 8.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQRNN---V 270
++ + +D ++ L GR G + FD MNL+L DE + K +R +
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 271 GMVVIRGNSIIML 309
G+V++RG +++ +
Sbjct: 61 GLVLLRGENLVSM 73
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.5 bits (63), Expect = 8.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE----SVEECKDGQ 258
M+ ++ + +D ++ L GR G + FD MNL+L DE + K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 259 RNN---VGMVVIRGNSIIML 309
R +G+V++RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,336,561
Number of Sequences: 237096
Number of extensions: 1303675
Number of successful extensions: 5217
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5217
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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