Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l15
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 110 6e-25
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 110 6e-25
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 58 6e-09
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 49 3e-06
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 43 1e-04
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 40 0.001
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 40 0.002
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 38 0.004
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 36 0.026
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 32 0.25
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 31 0.75
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 29 2.3
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 29 2.3
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 29 3.0
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical p... 27 7.0
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 9.2
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 9.2
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 9.2
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 110 bits (265), Expect = 6e-25
Identities = 47/76 (61%), Positives = 63/76 (82%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 110 bits (265), Expect = 6e-25
Identities = 47/76 (61%), Positives = 63/76 (82%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 279
MSK HPPELKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 280 VIRGNSIIMLESLDRL 327
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 57.6 bits (133), Expect = 6e-09
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Frame = +1
Query: 121 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV--------GM 276
+L +F+DK++ +K GR +GVLRGFD +N+VLD+ E +D Q +V G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 277 VVIRGNSIIMLESLDRL 327
+V RG +I ++ D L
Sbjct: 75 IVARGTAITVVSPADGL 91
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +1
Query: 100 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNV 270
MSK P LKK + K + +KLN+G G+L D +MN+ L E EE +GQ +N
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIAL-EQTEEYSNGQLQNKY 59
Query: 271 GMVVIRGNSIIMLES 315
G IRGN+++ + +
Sbjct: 60 GDAFIRGNNVLYIST 74
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKDGQRNNVGMVVIRG 291
L +M++ +++ GR + G+L+GFD +NLV+++ S E + +G+ +IRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 292 NSIIMLESLD 321
++ ++ +D
Sbjct: 65 ENVAIIGEID 74
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +1
Query: 136 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGN 294
+DKKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 295 SIIMLESLD 321
++ + +D
Sbjct: 74 NVELAGEID 82
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 184 GVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 315
G + GFD FMN+V DE+ E K RN +G ++++G++I ++ +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--EECKDGQR-NNVGMVVIRGN 294
+ K + K+ + + + + G L GFD ++N+VL++ V E DG+R + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 295 SIIML 309
I ML
Sbjct: 78 HITML 82
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 118 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 297
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 298 IIMLESLD 321
++ + +D
Sbjct: 71 VLYVGGVD 78
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +1
Query: 85 KKHITMSKA--HPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 243
KK +T+S P +L + +D+++ +K+ R + G LR FD +N+VL E VEE
Sbjct: 5 KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEE 59
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Frame = +1
Query: 94 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK-------- 249
+T+SK + ++ ++ ++ I L GR G + FD MN++L E E +
Sbjct: 1 MTISKNN--KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK 58
Query: 250 -DGQRNNV-GMVVIRGNSIIML 309
DG+ + G+V++RG I+ +
Sbjct: 59 TDGEEKRILGLVLVRGEHIVSM 80
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 197 PRNTPVTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNTELML 57
P PVT RPA N SM ++S C F + +C + EL+L
Sbjct: 1709 PAGIPVTGRPALKLEMNCTSMKHYDSFDC-FRLKVCDMSVQLDELLL 1754
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 148 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 300
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 148 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 300
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 124 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSI 300
LK + + ++L G G L+ D +MN+ L + + KDG + + +RG++I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
ZK1193.2 protein.
Length = 1250
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 37 YTKIHDNNINSVL*YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGF-DP 207
YT I+ NNI SV+ Y + P ++KF+ S + G G GF DP
Sbjct: 1131 YTGINGNNIQSVMDYIVLQNNSAPFRPAPVRKFLMLLSSQGWDKGNVSEGKENGFSDP 1188
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 100 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 207
+ K + P+ K DKK +IKL GR ++ DP
Sbjct: 248 LGKGYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDP 283
>Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical
protein F17A2.13 protein.
Length = 322
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 297 YYNAGIFRQTLVDLEWARNITNAVNVLHFSSINKYK 404
Y NAGI+RQ + D+ + N + H ++N +
Sbjct: 9 YSNAGIYRQAMEDIMFTPNKDKKKSAFHDETLNSLR 44
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 332 RLRVGKKYHQCCKCASLFINK*I*NSDLK 418
R +G K QC KCA +NK + NS +K
Sbjct: 565 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 593
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 332 RLRVGKKYHQCCKCASLFINK*I*NSDLK 418
R +G K QC KCA +NK + NS +K
Sbjct: 587 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 615
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 332 RLRVGKKYHQCCKCASLFINK*I*NSDLK 418
R +G K QC KCA +NK + NS +K
Sbjct: 587 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,603
Number of Sequences: 27780
Number of extensions: 220821
Number of successful extensions: 481
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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