Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l15
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.91 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.5  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 172 RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 327
           R V   + GFDP++    DE +E+  D +   +   +  G +I  L  L ++
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEKPTDKRMFVLAASIKAGYTIDRLYELTKI 276


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 332 RLRVGKKYHQCCKCASLFINK*I*NSDLK 418
           R   G K  +C KC+   +NK + NS LK
Sbjct: 9   RNHFGSKPFKCEKCSYSCVNKSMLNSHLK 37


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 348 RNITNAVNVLH 380
           +N+TN +NV+H
Sbjct: 30  KNLTNTLNVIH 40


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 245 VKTVSVTMLGWW*FVVTVL*CW 310
           ++ ++V  L +W F+V+ +  W
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLW 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,833
Number of Sequences: 438
Number of extensions: 2804
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)