Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l12
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0331 - 22087692-22087946,22088060-22088179,22088338-220884...    29   2.6  

>02_04_0331 -
           22087692-22087946,22088060-22088179,22088338-22088439,
           22088523-22088582,22088657-22088709,22088790-22088875,
           22089060-22089104,22089484-22089565,22089670-22089784
          Length = 305

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
 Frame = -2

Query: 416 STTFKMFRVLRLVCEKTMSFG----VWIGVLSSDIVAPTRAGDLLSNHFV*N*LNSS*AP 249
           +T F+  ++L++V     S G     ++    SD   P    D ++ H +     S   P
Sbjct: 140 TTIFEYLQLLKMVATSISSAGPLGMFYLAAAVSDFYVPW---DSMAKHKI----QSGGGP 192

Query: 248 KEMLTL*APKQLTVPRVGLSTMNVCKSFKTRVRCDSVFVKKESNLNE 108
            +M     PK L+V R   + +  C SFK     D +  K +  LN+
Sbjct: 193 LDMRLSQVPKMLSVLRNQWAPLAFCISFKLETDSDILIQKADMALNK 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,357
Number of Sequences: 37544
Number of extensions: 234973
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)