Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l12
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021217-1|AAH21217.2|  473|Homo sapiens NADH dehydrogenase (ubi...    29   8.5  
AK056041-1|BAB71080.1|  456|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>BC021217-1|AAH21217.2|  473|Homo sapiens NADH dehydrogenase
           (ubiquinone) flavoprotein 3, 10kDa protein.
          Length = 473

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 382 SLKTRNILKVVDLDRLKPEKNQQAN--GLTGVIHQGNNGVMPQGTVPTASFSEEYLK 546
           S K + +L+   +D   PEK  Q    G      +G     P+ T+P +   EE+LK
Sbjct: 204 SAKEKTLLQKPHVDITDPEKPHQPKKKGSPAKPSEGRENARPKTTMPRSQVDEEFLK 260


>AK056041-1|BAB71080.1|  456|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31479 fis, clone NT2NE2001634, moderately
           similar to NADH-UBIQUINONE OXIDOREDUCTASE 9 KD SUBUNIT
           PRECURSOR ).
          Length = 456

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 382 SLKTRNILKVVDLDRLKPEKNQQAN--GLTGVIHQGNNGVMPQGTVPTASFSEEYLK 546
           S K + +L+   +D   PEK  Q    G      +G     P+ T+P +   EE+LK
Sbjct: 187 SAKEKTLLQKPHVDITDPEKPHQPKKKGSPAKPSEGRENARPKTTMPRSQVDEEFLK 243


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,044,771
Number of Sequences: 237096
Number of extensions: 1368011
Number of successful extensions: 3663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3663
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)