Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20l12
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 30 1.0
U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine rece... 30 1.0
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 30 1.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 30 1.3
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical ... 27 7.0
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 9.3
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 9.3
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 9.3
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 9.3
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 9.3
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 9.3
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 384 SQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
SQDS F SSR +S + K P +R +D +K
Sbjct: 245 SQDSDEFPSSREQSVEKEKSPPAKRKRVNDENKK 278
>U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine
receptor, class xa protein4 protein.
Length = 322
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 76 ILYLLRRLKHCSFKFDSFFTKTESHRTLVL 165
I YL+R CS F +F +T+S R LVL
Sbjct: 266 ITYLVRLFAFCSLNFFVYFVETKSTRNLVL 295
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 292 LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 462
L +S R+G ++++L T + + + FSQ L + ++K +D + +K A L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 292 LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 462
L +S R+G ++++L T + + + FSQ L + ++K +D + +K A L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
protein C27B7.4 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 424 RLKPEKNQQANGLTGVIHQGNNGVMP 501
+L+ ++ QQ L G++ GNNG+MP
Sbjct: 653 QLQQQQQQQQQQLQGMMMMGNNGMMP 678
>AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical
protein K03H6.5 protein.
Length = 434
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 437 SGFKRSRSTTFKMFRVLRLVCEKTMSFGVWIGVLSSDIVAPTRAGDLLSN 288
S F RS+S + ++ C + +F V SS +VAP A L+SN
Sbjct: 365 SNFTRSKSVITQKTSIVYSPCSR--NFSTSRKVSSSSVVAPKGASQLISN 412
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 321 DDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
D++G+ K +N D+ R R +K K P R + +PR+
Sbjct: 413 DELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRSSRRSEHSTPRQ 467
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 321 DDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
D++G+ K +N D+ R R +K K P R + +PR+
Sbjct: 382 DELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRSSRRSEHSTPRQ 436
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 321 DDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
D++G+ K +N D+ R R +K K P R + +PR+
Sbjct: 382 DELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRSSRRSEHSTPRQ 436
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 321 DDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
D++G+ K +N D+ R R +K K P R + +PR+
Sbjct: 382 DELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRSSRRSEHSTPRQ 436
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 321 DDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
D++G+ K +N D+ R R +K K P R + +PR+
Sbjct: 413 DELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRSSRRSEHSTPRQ 467
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 321 DDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 485
D++G+ K +N D+ R R +K K P R + +PR+
Sbjct: 382 DELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRSSRRSEHSTPRQ 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,947
Number of Sequences: 27780
Number of extensions: 236633
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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