Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20l08
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.91 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 557 TWRLNTDPHTGFRVDWSLAINR 492
           T +L+TDP+T F+V+ S  I R
Sbjct: 680 TEKLSTDPNTHFQVNQSHGIKR 701



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 476 YYTPKDLLSDGNVYDSTSTLDNISFLDK 393
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 476 YYTPKDLLSDGNVYDSTSTLDNISFLDK 393
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 294 GCSSSHKHERYHHQCSRHDQS 232
           G  S   H++ HH  S H Q+
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQA 824


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,769
Number of Sequences: 438
Number of extensions: 4752
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)